Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GR340_RS06740 Genome accession   NZ_CP047197
Coordinates   1268499..1268993 (+) Length   164 a.a.
NCBI ID   WP_002807365.1    Uniprot ID   -
Organism   Campylobacter coli strain JZ_1_95     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1263499..1273993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR340_RS06725 (GR340_06615) - 1264877..1266058 (-) 1182 WP_002786473.1 metal-dependent hydrolase -
  GR340_RS06730 (GR340_06620) - 1266067..1266966 (-) 900 WP_277737321.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  GR340_RS06735 (GR340_06625) gatB 1266966..1268384 (-) 1419 WP_002781309.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  GR340_RS06740 (GR340_06630) luxS 1268499..1268993 (+) 495 WP_002807365.1 S-ribosylhomocysteine lyase Regulator
  GR340_RS06745 (GR340_06635) - 1269310..1270302 (+) 993 WP_277737322.1 isopenicillin N synthase family oxygenase -
  GR340_RS06750 (GR340_06640) - 1270316..1271086 (+) 771 WP_002845675.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  GR340_RS06755 (GR340_06645) metE 1271109..1273373 (+) 2265 WP_002845672.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18314.25 Da        Isoelectric Point: 6.3290

>NTDB_id=357979 GR340_RS06740 WP_002807365.1 1268499..1268993(+) (luxS) [Campylobacter coli strain JZ_1_95]
MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSDLVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEASMKDVLNVSDQNKIPELNIYQCGTCAMHSLNEAKEIAQKVLNSSIGVMNNKELK
LENI

Nucleotide


Download         Length: 495 bp        

>NTDB_id=357979 GR340_RS06740 WP_002807365.1 1268499..1268993(+) (luxS) [Campylobacter coli strain JZ_1_95]
ATGCCATTACTTGATAGTTTTAAAGTAGATCATACCAAAATGCCAGCACCCGCTGTGCGTTTAGCTAAAACAATGAAGAC
ACCAAAAGGCGATGATATTAGCGTATTTGACTTGCGTTTTTGCATACCCAATAAAGACATCATGAGTGAAAAAGGTACGC
ATACACTAGAACACTTATTTGCAGGTTTTATGAGAGATCATTTAAATTCGGATTTGGTTGAAATCATCGACATTTCACCT
ATGGGATGTCGCACAGGTTTTTATATGAGTTTAATTGGCACACCGGATGAAAAAAGTGTTGCTAAAGCTTGGGAAGCCTC
AATGAAAGATGTTTTAAATGTAAGCGATCAAAACAAAATTCCTGAACTCAATATCTATCAATGCGGAACTTGTGCTATGC
ATTCCTTAAATGAAGCAAAAGAAATTGCACAAAAAGTTTTAAATTCTAGTATAGGTGTGATGAATAATAAAGAATTAAAA
CTTGAAAATATTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707