Detailed information NTG0357977

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: GR340_RS06510
• Genome accession: NZ_CP047197
• Coordinates: 1223599..1224543 (+)
• Length: 314 a.a.
• NCBI ID: WP_277737313.1
• Uniprot ID: -
• Organism: Campylobacter coli strain JZ_1_95
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1218599..1229543

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GR340_RS06490 (GR340_06380)	-	1219375..1220313 (-)	939	WP_002844801.1	NAD-dependent epimerase/dehydratase family protein	-
GR340_RS06495 (GR340_06385)	gmd	1220306..1221454 (-)	1149	WP_250405453.1	GDP-mannose 4,6-dehydratase	-
GR340_RS06500 (GR340_06390)	-	1221387..1222676 (-)	1290	WP_250405455.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
GR340_RS06505 (GR340_06395)	-	1222719..1223540 (-)	822	WP_215460502.1	glycosyltransferase family 2 protein	-
GR340_RS06510 (GR340_06400)	waaF	1223599..1224543 (+)	945	WP_277737313.1	lipopolysaccharide heptosyltransferase II	Regulator
GR340_RS06515 (GR340_06405)	-	1224536..1225300 (-)	765	WP_250426857.1	glycosyltransferase family 25 protein	-
GR340_RS06520 (GR340_06410)	gmhA	1225300..1225860 (-)	561	WP_233916286.1	D-sedoheptulose 7-phosphate isomerase	-
GR340_RS06525 (GR340_06415)	rfaE1	1225857..1227242 (-)	1386	WP_250426858.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
GR340_RS06530 (GR340_06420)	rfaD	1227235..1228188 (-)	954	WP_072238544.1	ADP-glyceromanno-heptose 6-epimerase	-
GR340_RS06535 (GR340_06425)	-	1228185..1228706 (-)	522	WP_233908872.1	HAD family hydrolase	-
GR340_RS06540 (GR340_06430)	-	1228825..1229124 (+)	300	WP_002777238.1	cytochrome c	-
GR340_RS06545 (GR340_06435)	-	1229154..1229354 (-)	201	WP_002777240.1	cbb3-type cytochrome oxidase assembly protein	-

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 36059.61 Da
• Isoelectric Point: 10.2686

>NTDB_id=357977 GR340_RS06510 WP_277737313.1 1223599..1224543(+) (waaF) [Campylobacter coli strain JZ_1_95]
MKIFIHLPTWLGDAVMASSALYGVYHYFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKAKQRYFFNKYDFKEEHQVLKYLYFIENSLDIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKMLCQNIIFCDIFITNDS
GTMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLACMPCMQKTCPLKHHQCMKDLKPEKILEAIRNFT

Nucleotide

• Length: 945 bp

>NTDB_id=357977 GR340_RS06510 WP_277737313.1 1223599..1224543(+) (waaF) [Campylobacter coli strain JZ_1_95]
ATGAAAATTTTTATCCATCTTCCCACTTGGCTAGGCGATGCGGTTATGGCTTCATCTGCTTTATATGGAGTTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAGCCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCTTCCAAGATCATTTTACACATCCTTAAGGCAAAACAAAGATATTTTTTTAACAAATATGATTT
TAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCACTAGACATCAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGCTTAAATCCTGGAGCA
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGTTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCGGGCAAGGCAGAACAAGAACTTTGCGATGAAATTTTTCATATATTAAAAGAAAAAAATGTCAAGGTAA
AAAATCTTTGCAATAAAACCACCATCAAAATGCTTTGTCAAAATATCATTTTTTGTGATATTTTCATCACAAATGATAGT
GGCACTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATCTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTAGCTTGTATGCCTTGCATGCAAAAAACCTGCCCTTTAAAAC
ATCATCAGTGTATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCGAAATTTTACTTAA

Domains

Predicted by InterProScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (105-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	82.748	99.682	0.825