Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   GR340_RS03545 Genome accession   NZ_CP047197
Coordinates   671335..671715 (+) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain JZ_1_95     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 666335..676715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR340_RS03525 (GR340_03465) - 666444..668378 (-) 1935 WP_002816777.1 ribonuclease R family protein -
  GR340_RS03530 (GR340_03470) ilvC 668501..669523 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  GR340_RS03535 (GR340_03475) - 669526..670578 (+) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  GR340_RS03540 (GR340_03480) dprA 670568..671338 (+) 771 WP_277737542.1 DNA-processing protein DprA Machinery gene
  GR340_RS03545 (GR340_03485) dprB 671335..671715 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  GR340_RS03550 (GR340_03490) - 671705..672580 (+) 876 WP_002781660.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  GR340_RS03555 (GR340_03495) msrA 672803..673303 (-) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  GR340_RS03560 (GR340_03500) ppa 673351..673869 (-) 519 WP_002776378.1 inorganic diphosphatase -
  GR340_RS03565 (GR340_03505) - 673879..674454 (-) 576 WP_002781658.1 adenylate kinase -
  GR340_RS03570 (GR340_03510) aspS 674451..676202 (-) 1752 WP_233908783.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=357965 GR340_RS03545 WP_002776373.1 671335..671715(+) (dprB) [Campylobacter coli strain JZ_1_95]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=357965 GR340_RS03545 WP_002776373.1 671335..671715(+) (dprB) [Campylobacter coli strain JZ_1_95]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421