Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   GQY29_RS08135 Genome accession   NZ_CP047191
Coordinates   1537975..1539045 (+) Length   356 a.a.
NCBI ID   WP_159341051.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain EU01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1532975..1544045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQY29_RS08115 (GQY29_08115) - 1534290..1534670 (-) 381 WP_023909648.1 hypothetical protein -
  GQY29_RS08120 (GQY29_08120) - 1534698..1535873 (+) 1176 WP_159341049.1 IS256-like element IS1191 family transposase -
  GQY29_RS08125 (GQY29_08125) - 1535898..1536578 (-) 681 WP_023909640.1 hypothetical protein -
  GQY29_RS08130 (GQY29_08130) - 1536761..1537750 (+) 990 WP_023909638.1 lipoate--protein ligase -
  GQY29_RS08135 (GQY29_08135) xerS 1537975..1539045 (+) 1071 WP_159341051.1 tyrosine recombinase XerS Machinery gene
  GQY29_RS08140 (GQY29_08140) - 1539207..1541747 (-) 2541 WP_011225973.1 M1 family metallopeptidase -
  GQY29_RS08145 (GQY29_08145) phoU 1541881..1542534 (-) 654 WP_041827032.1 phosphate signaling complex protein PhoU -
  GQY29_RS08150 (GQY29_08150) pstB 1542562..1543320 (-) 759 WP_014621574.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41533.69 Da        Isoelectric Point: 9.6822

>NTDB_id=357937 GQY29_RS08135 WP_159341051.1 1537975..1539045(+) (xerS) [Streptococcus thermophilus strain EU01]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLAVPYSFTTLYEYLKEYKRFFNWLIDSGISDTDDIASIHIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKMMVIDVTRKGGQRDS
VNMASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=357937 GQY29_RS08135 WP_159341051.1 1537975..1539045(+) (xerS) [Streptococcus thermophilus strain EU01]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATACAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTAGCGGTACCGTATTCTTTCACGACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACTCAGGTATTTCAGATACTGATGATATTGCCTCAATTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCGTTTGTCCTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAACAACTATTAA
TCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAACGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAGACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGATGAAACCATGAAGTTCCTTGATTATGTAGAAAATGAATACGAAGTCAAACTCTCAAATCGTGCGAA
ATCTTCGTTTTATAAGAATAAAGAGCGAGATTTAGCCATCATTGCCCTGCTGCTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTAAATCTGGACCTTAAAGATATCAATTTAAAAATGATGGTTATTGACGTTACTCGAAAAGGTGGTCAACGGGACTCG
GTTAATATGGCGAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCTA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAACTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCATCAACTTGGTCATGCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(182-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.584

100

0.826