Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   D1605_RS03265 Genome accession   NZ_CP047171
Coordinates   766434..768236 (-) Length   600 a.a.
NCBI ID   WP_004090674.1    Uniprot ID   B2I9J7
Organism   Xylella fastidiosa subsp. fastidiosa strain IVIA5235     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 761434..773236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1605_RS03245 (D1605_003325) trpA 762050..762856 (+) 807 WP_004083823.1 tryptophan synthase subunit alpha -
  D1605_RS03250 (D1605_003330) radA/sms 763097..764488 (-) 1392 WP_011097721.1 DNA repair protein RadA Machinery gene
  D1605_RS03255 (D1605_003335) - 764666..765631 (+) 966 WP_011097722.1 LLM class flavin-dependent oxidoreductase -
  D1605_RS03260 (D1605_003340) - 765832..766311 (-) 480 WP_004083818.1 hypothetical protein -
  D1605_RS03265 (D1605_003345) recQ 766434..768236 (-) 1803 WP_004090674.1 DNA helicase RecQ Machinery gene
  D1605_RS03270 (D1605_003350) - 768417..768959 (-) 543 WP_004090677.1 Dps family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 67509.20 Da        Isoelectric Point: 8.4221

>NTDB_id=357802 D1605_RS03265 WP_004090674.1 766434..768236(-) (recQ) [Xylella fastidiosa subsp. fastidiosa strain IVIA5235]
MSTSSATQTVLQRVFGYDTFRGPQQAIIEHVAAGHDALVLMPTGGGKSLCYQVPALLRKGIGVVISPLIALMQDQVETLR
QLGVRAAYLNSTLDATQAQRIEHALVTADLDLLYIAPERLLTAHFLSLLERSQIALFAIDEAHCVSQWGHDFRPEYRQLT
VLHERWPHVPRIALTATADPPTQREIAERLDLSDAHHFISSFDRPNIRYTVVQKNNMRRQLQEFLSRHRNTAGIVYAMSR
RKTEEIAAYLCTQGYNALPYHAGLPAETRAKHQRCFLREEGIVMCATIAFGMGINKPDVRFVAHIDLPKSLEGYYQETGR
AGRDGEAAEAWMCYSLGDVVLLKQMIEQSEASEARKCVERAKLDHLLGYCESMQCRRQLLLSSFGETYPNPCGNCDNCLT
PATAWDATVLSQKALSCVYRTGQRFGVGHLIDILRGSKSQRILQLGHDQLSTYGIGRDVDERSWRSVFRQLVATHLLEVD
NEGYGGLRLTPSSRPVLKGERQVMMRRDQFIRERDRTGQRHGLSVLPEDLGLFNALHRLRAQLAKEQNVPAFVIFHDSTL
RHIAEQRPTNINALSKINGIGSNKLTRYGHQLIELVLAQG

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=357802 D1605_RS03265 WP_004090674.1 766434..768236(-) (recQ) [Xylella fastidiosa subsp. fastidiosa strain IVIA5235]
ATGAGCACGTCTTCCGCCACCCAGACCGTTCTACAACGCGTCTTCGGCTACGACACCTTCCGTGGGCCCCAGCAAGCCAT
CATTGAGCATGTCGCTGCCGGCCACGATGCCTTGGTCCTGATGCCCACCGGGGGCGGCAAATCATTGTGCTACCAAGTGC
CTGCGCTGCTGCGCAAAGGCATCGGCGTCGTCATCTCGCCGCTGATTGCACTGATGCAAGACCAAGTCGAGACCCTACGT
CAGCTTGGCGTACGCGCCGCCTATCTCAACTCGACCCTAGATGCAACGCAGGCACAACGGATCGAACACGCTCTAGTCAC
CGCAGATCTAGACCTGCTGTATATCGCTCCGGAACGGTTACTCACTGCACACTTCTTATCGCTGCTGGAACGTAGCCAGA
TCGCTTTGTTCGCAATAGACGAAGCTCACTGCGTCTCACAGTGGGGACATGATTTCCGTCCCGAATACCGCCAACTCACC
GTACTTCATGAACGTTGGCCACACGTGCCTCGGATTGCACTGACCGCAACCGCCGACCCACCCACGCAACGCGAAATTGC
TGAGCGCCTTGACCTAAGCGATGCGCATCACTTCATCAGCTCATTCGACCGCCCCAACATCCGCTACACGGTCGTGCAGA
AAAACAATATGCGGCGCCAACTACAAGAATTCCTCAGCCGCCATCGCAACACCGCAGGCATTGTCTACGCCATGTCACGG
CGCAAAACCGAAGAAATCGCCGCCTATCTGTGTACACAAGGCTACAACGCACTGCCTTACCATGCCGGCCTACCAGCCGA
AACACGGGCCAAGCACCAACGCTGCTTTCTGCGTGAAGAAGGGATTGTGATGTGTGCCACCATCGCCTTCGGCATGGGCA
TCAACAAACCTGATGTCCGCTTTGTCGCCCACATCGACCTCCCCAAATCACTGGAGGGTTATTACCAGGAAACCGGCCGC
GCCGGCCGCGATGGCGAAGCTGCAGAAGCATGGATGTGCTATAGCCTGGGAGACGTCGTACTGCTGAAACAAATGATCGA
ACAAAGCGAAGCCAGCGAAGCACGCAAGTGCGTAGAACGCGCCAAACTCGATCACCTGCTGGGCTACTGCGAATCAATGC
AATGCCGCCGCCAACTCTTACTGTCCAGCTTCGGGGAAACGTATCCAAACCCCTGTGGCAACTGTGACAACTGCCTGACC
CCAGCCACCGCCTGGGATGCCACCGTGCTCTCCCAAAAGGCGTTAAGTTGCGTCTACCGCACTGGCCAGCGCTTCGGGGT
TGGTCACCTCATCGACATACTACGTGGCAGTAAGAGCCAAAGAATATTGCAACTGGGTCATGACCAACTCAGCACCTACG
GCATCGGCCGTGACGTGGATGAACGCAGCTGGCGCAGTGTCTTTCGCCAACTCGTCGCCACACACCTGTTGGAGGTCGAC
AACGAAGGCTACGGCGGCTTACGCCTGACCCCAAGCAGTCGTCCAGTCCTCAAAGGCGAACGCCAAGTCATGATGCGTCG
TGATCAGTTCATCCGTGAACGCGACCGTACCGGCCAACGTCACGGACTATCGGTCCTCCCGGAAGATCTGGGACTCTTCA
ATGCCCTGCATCGCTTACGTGCACAACTCGCCAAAGAACAAAACGTGCCGGCATTCGTGATCTTCCATGACAGCACCTTG
CGCCATATTGCCGAGCAACGCCCTACCAACATCAATGCACTGAGCAAAATCAACGGGATCGGCAGCAACAAACTGACACG
CTATGGCCATCAGTTAATTGAACTCGTACTTGCGCAAGGATGA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(337-399)

Helicase conserved C-terminal domain (Helicase_C)

(220-324)

DEAD/DEAH box helicase (DEAD)

(24-179)

HRDC domain (HRDC)

(530-596)

RQC domain (RQC)

(403-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2I9J7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

38.28

98.833

0.378