Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   D1605_RS00445 Genome accession   NZ_CP047171
Coordinates   116831..117466 (+) Length   211 a.a.
NCBI ID   WP_004087617.1    Uniprot ID   Q87F45
Organism   Xylella fastidiosa subsp. fastidiosa strain IVIA5235     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 111831..122466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1605_RS00435 (D1605_000445) - 113253..114281 (-) 1029 WP_004087619.1 right-handed parallel beta-helix repeat-containing protein -
  D1605_RS00440 (D1605_000450) - 115327..116358 (+) 1032 WP_011097498.1 nitronate monooxygenase family protein -
  D1605_RS00445 (D1605_000455) dinR/lexA 116831..117466 (+) 636 WP_004087617.1 transcriptional repressor LexA Regulator
  D1605_RS00450 (D1605_000460) recA 117648..118691 (+) 1044 WP_004087616.1 recombinase RecA Machinery gene
  D1605_RS00455 (D1605_000465) alaS 119179..121833 (+) 2655 WP_004087615.1 alanine--tRNA ligase -
  D1605_RS00460 (D1605_000470) csrA 121972..122187 (+) 216 WP_004085529.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23322.74 Da        Isoelectric Point: 6.2323

>NTDB_id=357790 D1605_RS00445 WP_004087617.1 116831..117466(+) (dinR/lexA) [Xylella fastidiosa subsp. fastidiosa strain IVIA5235]
MSLSDIQQAILSLITNNINADGVSPSQTEIARAFGFKGVRAVQHHLDVLEQQGMIRRIPGQARGIRLKHLTEVDEVALAL
QSKDVLRLPVLGRVAAGQPIGADIGEDHVVLLDRVFFSPAPDYLLRVQGDSMRDEGIFDGDLIGVHRTQDAHSGQIVVAR
IDDEITVKLLKISKDRIRLLPRNPDFAPIEVRSDQDFAIEGLYCGLLRPNR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=357790 D1605_RS00445 WP_004087617.1 116831..117466(+) (dinR/lexA) [Xylella fastidiosa subsp. fastidiosa strain IVIA5235]
ATGAGTTTGAGCGATATTCAGCAGGCAATCCTGTCATTGATTACCAACAACATCAACGCTGATGGCGTTTCTCCTTCGCA
GACGGAGATCGCGCGTGCATTTGGCTTCAAAGGGGTTCGCGCGGTGCAGCATCACCTTGATGTATTGGAGCAACAGGGGA
TGATTCGCCGCATCCCTGGACAGGCGCGTGGCATCCGGTTGAAGCATCTTACTGAGGTGGATGAGGTTGCGTTAGCTTTG
CAGAGTAAGGATGTGTTGCGCTTGCCAGTGCTCGGCCGCGTTGCGGCTGGTCAGCCGATCGGTGCTGATATCGGTGAGGA
TCACGTGGTGTTGTTGGATCGTGTGTTCTTCTCCCCAGCACCGGATTATCTGTTGAGGGTGCAAGGTGATTCGATGCGCG
ATGAAGGAATTTTCGATGGTGATTTGATCGGCGTACATCGTACGCAGGATGCGCATTCTGGGCAAATTGTGGTGGCGCGC
ATTGATGATGAGATTACCGTCAAATTGTTGAAGATCAGTAAAGACCGGATTCGTTTGCTACCGCGTAATCCTGACTTTGC
ACCGATTGAGGTGAGGTCAGATCAGGATTTCGCCATTGAGGGATTGTATTGCGGTTTGCTGCGCCCCAACCGGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(89-202)

LexA DNA binding domain (LexA_DNA_bind)

(2-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87F45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

37.799

99.052

0.374

Multiple sequence alignment