Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   E4A35_RS06555 Genome accession   NZ_CP039269
Coordinates   1277409..1277732 (-) Length   107 a.a.
NCBI ID   WP_000578883.1    Uniprot ID   A0A150B540
Organism   Bacillus cereus strain MH19     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1272409..1282732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4A35_RS06530 - 1272721..1274007 (+) 1287 WP_128295044.1 D-alanyl-D-alanine carboxypeptidase family protein -
  E4A35_RS06535 - 1274201..1274770 (+) 570 WP_000767813.1 signal peptidase I -
  E4A35_RS06540 - 1274833..1275420 (+) 588 WP_000172838.1 CalY family protein -
  E4A35_RS06545 - 1275584..1276501 (+) 918 WP_240671931.1 DUF4047 domain-containing protein -
  E4A35_RS06550 - 1276775..1277374 (+) 600 WP_128295046.1 CalY family protein -
  E4A35_RS06555 sinR 1277409..1277732 (-) 324 WP_000578883.1 helix-turn-helix domain-containing protein Regulator
  E4A35_RS06560 - 1277812..1277946 (-) 135 WP_000276217.1 anti-repressor SinI family protein -
  E4A35_RS06565 inhA1 1278290..1280677 (+) 2388 WP_128295047.1 M6 family metalloprotease immune inhibitor InhA1 -
  E4A35_RS06570 - 1280849..1282216 (+) 1368 WP_070171646.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12358.20 Da        Isoelectric Point: 9.6248

>NTDB_id=357767 E4A35_RS06555 WP_000578883.1 1277409..1277732(-) (sinR) [Bacillus cereus strain MH19]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=357767 E4A35_RS06555 WP_000578883.1 1277409..1277732(-) (sinR) [Bacillus cereus strain MH19]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCTGGCGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150B540

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment