Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GR131_RS21545 Genome accession   NZ_CP047147
Coordinates   4952055..4953035 (+) Length   326 a.a.
NCBI ID   WP_003950652.1    Uniprot ID   A0ABR4SAQ8
Organism   Streptomyces sp. GF20     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4947055..4958035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR131_RS21525 (GR131_21525) - 4947060..4948208 (+) 1149 WP_018469336.1 dipeptide ABC transporter ATP-binding protein -
  GR131_RS21530 (GR131_21530) - 4948416..4950047 (+) 1632 WP_003950649.1 ABC transporter substrate-binding protein -
  GR131_RS21535 (GR131_21535) - 4950139..4951062 (+) 924 WP_003950650.1 ABC transporter permease -
  GR131_RS21540 (GR131_21540) - 4951055..4952041 (+) 987 WP_003950651.1 ABC transporter permease -
  GR131_RS21545 (GR131_21545) amiE 4952055..4953035 (+) 981 WP_003950652.1 ABC transporter ATP-binding protein Regulator
  GR131_RS21550 (GR131_21550) - 4953022..4954248 (+) 1227 WP_030769646.1 dipeptide ABC transporter ATP-binding protein -
  GR131_RS21555 (GR131_21555) - 4954451..4955323 (+) 873 WP_015507148.1 aminoglycoside phosphotransferase family protein -
  GR131_RS21560 (GR131_21560) - 4955453..4956487 (+) 1035 WP_159313070.1 hypothetical protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35781.39 Da        Isoelectric Point: 6.2366

>NTDB_id=357765 GR131_RS21545 WP_003950652.1 4952055..4953035(+) (amiE) [Streptomyces sp. GF20]
MLLDVRDLQVEFHTREGVAKAVNGVSYSVDAGETLAVLGESGSGKSVTAQAIMGILDTPPGHITGGEIIFEGRDLLTLKE
DRRRKVRGAEMAMIFQDALSSLNPVLTVGEQLGEMFTVHRGMSRKDAKARAVELMDRVRIPAATARVDQYPHQFSGGMRQ
RIMIAMAMALEPKLIIADEPTTALDVTVQAQVMELLAELQREYNMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHD
IYRAPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLLAIPPGCAFHPRCPLAQPVCTTDEPPLYEVDPRRRSACHFWKE
TLDGAR

Nucleotide


Download         Length: 981 bp        

>NTDB_id=357765 GR131_RS21545 WP_003950652.1 4952055..4953035(+) (amiE) [Streptomyces sp. GF20]
ATGTTGCTCGACGTGCGCGACCTCCAGGTGGAGTTCCACACCAGGGAAGGCGTCGCCAAGGCCGTCAACGGCGTCTCCTA
CTCCGTCGACGCGGGGGAGACCCTGGCGGTGCTCGGCGAATCCGGCTCCGGCAAGTCCGTCACCGCCCAGGCGATCATGG
GCATCCTCGACACCCCGCCCGGGCACATCACGGGCGGGGAGATCATCTTCGAGGGGCGCGACCTGCTGACCCTCAAGGAG
GACCGGCGGCGCAAGGTGCGCGGCGCCGAGATGGCGATGATCTTCCAGGACGCGCTCTCCTCGCTCAACCCGGTGCTCAC
CGTCGGCGAGCAGCTCGGCGAGATGTTCACCGTCCACCGCGGCATGTCCCGCAAGGACGCCAAGGCGCGGGCGGTCGAGC
TGATGGACCGGGTCCGCATCCCGGCCGCCACCGCACGCGTCGACCAGTACCCGCACCAGTTCTCCGGCGGCATGCGCCAG
CGCATCATGATCGCCATGGCGATGGCGCTGGAGCCCAAGCTGATCATCGCCGACGAGCCCACCACCGCCCTCGACGTCAC
CGTCCAGGCCCAGGTCATGGAGTTGCTCGCGGAACTCCAGCGCGAGTACAACATGGGGCTCATCCTCATCACCCACGACC
TCGGTGTCGTCGCCGACGTCGCCGACAAGATCGCGGTGATGTACGCGGGCCGGATCGTCGAGACCGCCCCCGTCCACGAC
ATCTACCGGGCCCCCGCCCACCCGTACACCCGGGGACTGCTCGACTCCATCCCGCGCCTGGACCAGAAGGGCCAGGAGCT
GTACGCGATCAAGGGGCTGCCGCCCAACCTGCTGGCCATCCCGCCCGGCTGCGCCTTCCACCCGCGCTGCCCGCTGGCCC
AGCCGGTCTGCACCACCGACGAGCCGCCGCTCTACGAGGTCGACCCGCGCCGCCGGAGCGCCTGCCACTTCTGGAAGGAG
ACGCTCGATGGAGCCCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(23-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

46.749

99.08

0.463
  amiE Streptococcus thermophilus LMG 18311

46.13

99.08

0.457
  amiE Streptococcus thermophilus LMD-9

46.13

99.08

0.457
  oppD Streptococcus mutans UA159

45.86

96.319

0.442

Multiple sequence alignment