Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   STHE_RS02440 Genome accession   NC_013523
Coordinates   558768..560156 (+) Length   462 a.a.
NCBI ID   WP_012870982.1    Uniprot ID   D1C7V2
Organism   Sphaerobacter thermophilus DSM 20745     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 553768..565156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STHE_RS02430 (Sthe_0495) rpsA 554601..555980 (+) 1380 WP_012870980.1 30S ribosomal protein S1 -
  STHE_RS02435 (Sthe_0496) - 556184..558637 (+) 2454 WP_012870981.1 ATP-dependent Clp protease ATP-binding subunit -
  STHE_RS02440 (Sthe_0497) radA 558768..560156 (+) 1389 WP_012870982.1 DNA repair protein RadA Machinery gene
  STHE_RS02445 (Sthe_0498) murG 560197..561330 (-) 1134 WP_245534873.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  STHE_RS02450 (Sthe_0499) - 561544..561936 (+) 393 WP_012870984.1 TraR/DksA C4-type zinc finger protein -
  STHE_RS02455 (Sthe_0500) lspA 561933..562511 (+) 579 WP_012870985.1 signal peptidase II -
  STHE_RS02460 (Sthe_0501) - 562658..563584 (+) 927 WP_041398738.1 RluA family pseudouridine synthase -
  STHE_RS02465 (Sthe_0502) - 563587..564906 (+) 1320 WP_012870987.1 DUF4147 domain-containing protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49135.26 Da        Isoelectric Point: 7.0271

>NTDB_id=35774 STHE_RS02440 WP_012870982.1 558768..560156(+) (radA) [Sphaerobacter thermophilus DSM 20745]
MSKARTKFVCQNCGMETPAYYGRCPQCGTWGSMVETVEARGPARERRERGMPATRPARLSEVTSAEERRKVVPIGEFNRV
LGGGLVPGSLVLLGGDPGVGKSTLLLQVAGLLAPSAGPVVYVSAEESTQQIKLRADRLGITADDLYLLSETNLEAALDAV
DPVKPGLLIVDSIQTVYLDDLTSAAGSVSQVRECTARLMQYAKPRHLPVFIVGHVTKEGAIAGPRVLEHMVDAVLYLEGE
RYHQYRVLRAVKNRFGSTDEVGVFAMTGDGMQEVANPSEAFLQERSPDTHGSAVGVTLEGTRPILVEVQALTSNSAFGLP
RRTANGFDNNRLQMLVAVLSKRVGLGLGSQDIYVNIVGGLRIAEPAADLAVVTAIASSYRERPVDPNTVVIGEVGLSGEL
RSVNQIERRLNEASKLGFARAVVPAPGGRRQLPKVSGIEVIPAASAAEAIEMALVHGPVGGS

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=35774 STHE_RS02440 WP_012870982.1 558768..560156(+) (radA) [Sphaerobacter thermophilus DSM 20745]
ATGAGCAAGGCGCGGACGAAGTTCGTCTGTCAGAACTGCGGGATGGAGACCCCGGCGTACTACGGGCGCTGCCCGCAGTG
CGGGACATGGGGGAGCATGGTCGAGACGGTCGAAGCGCGCGGCCCGGCGCGGGAGCGGCGGGAGCGCGGCATGCCCGCCA
CCCGGCCAGCGCGGCTATCCGAGGTGACCAGCGCCGAGGAGCGCCGCAAGGTCGTCCCCATCGGGGAGTTCAACCGGGTT
CTGGGCGGCGGCCTCGTCCCCGGCTCGCTCGTGCTCCTCGGCGGGGACCCAGGCGTCGGCAAGAGCACGCTGCTCCTGCA
GGTGGCCGGGCTGCTGGCACCGTCCGCCGGGCCGGTGGTGTACGTGTCGGCCGAGGAATCGACCCAGCAGATCAAGCTGC
GCGCGGACCGGCTCGGGATCACCGCCGATGATCTCTACCTCCTCTCGGAAACGAACCTGGAGGCGGCTCTGGATGCCGTC
GACCCGGTGAAGCCGGGCCTGCTCATCGTCGACTCGATCCAGACGGTCTACCTGGATGACCTGACATCCGCTGCCGGCAG
CGTCAGCCAGGTGCGGGAGTGCACCGCTCGCCTGATGCAGTACGCCAAGCCGCGGCACCTGCCGGTCTTTATCGTGGGCC
ACGTGACCAAGGAGGGCGCCATCGCCGGGCCGCGCGTGCTGGAGCATATGGTCGATGCGGTGCTCTACCTGGAGGGCGAG
CGTTACCACCAATATCGGGTGCTGCGAGCGGTGAAGAACCGGTTCGGGTCGACCGACGAGGTCGGCGTCTTCGCTATGAC
CGGCGACGGTATGCAGGAGGTGGCCAATCCCTCGGAGGCGTTCCTCCAGGAGCGCTCCCCGGATACGCACGGCTCGGCGG
TCGGCGTCACGCTGGAGGGGACGCGGCCGATCCTGGTTGAGGTCCAGGCGCTGACGAGCAACAGCGCGTTCGGCCTGCCG
CGCCGCACGGCGAACGGCTTCGACAACAACCGCTTGCAGATGCTGGTGGCCGTGCTGAGCAAGCGGGTCGGCCTGGGGCT
CGGGAGTCAGGACATCTACGTCAACATCGTGGGCGGGCTGCGCATCGCAGAGCCTGCCGCCGATCTGGCCGTGGTCACGG
CGATCGCGTCAAGTTATCGGGAGCGCCCGGTCGATCCCAACACGGTGGTGATCGGCGAGGTCGGGTTGTCCGGGGAACTG
CGCAGCGTGAACCAGATCGAGCGACGGCTGAACGAGGCGTCCAAGCTGGGGTTCGCGCGGGCGGTGGTCCCGGCGCCGGG
CGGCCGGAGGCAGTTGCCCAAAGTGTCGGGTATCGAGGTGATCCCGGCTGCGAGCGCCGCCGAGGCGATCGAGATGGCGC
TGGTGCACGGGCCGGTAGGCGGATCTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-219)

Subunit ChlI of Mg-chelatase (ChlI)

(343-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D1C7V2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

55.58

98.918

0.55
  radA Streptococcus pneumoniae Rx1

55.896

91.775

0.513
  radA Streptococcus pneumoniae D39

55.896

91.775

0.513
  radA Streptococcus pneumoniae R6

55.896

91.775

0.513
  radA Streptococcus pneumoniae TIGR4

55.896

91.775

0.513
  radA Streptococcus mitis NCTC 12261

55.896

91.775

0.513
  radA Streptococcus mitis SK321

55.896

91.775

0.513

Multiple sequence alignment