Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E6P07_RS01175 Genome accession   NZ_CP039268
Coordinates   251277..252650 (+) Length   457 a.a.
NCBI ID   WP_153973923.1    Uniprot ID   A0A6I6DVY7
Organism   Thermochromatium tepidum ATCC 43061     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 246277..257650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6P07_RS01155 (E6P07_01155) - 247673..249478 (-) 1806 WP_153973921.1 ABC transporter transmembrane domain-containing protein -
  E6P07_RS01165 (E6P07_01165) - 249855..250547 (+) 693 WP_211363146.1 helix-turn-helix domain-containing protein -
  E6P07_RS01170 (E6P07_01170) - 250767..251270 (+) 504 WP_170286776.1 molecular chaperone DnaJ -
  E6P07_RS01175 (E6P07_01175) radA 251277..252650 (+) 1374 WP_153973923.1 DNA repair protein RadA Machinery gene
  E6P07_RS01180 (E6P07_01180) - 252691..253494 (-) 804 WP_153973924.1 metal ABC transporter permease -
  E6P07_RS01185 (E6P07_01185) - 253500..254120 (-) 621 WP_153973925.1 ATP-binding cassette domain-containing protein -
  E6P07_RS01190 (E6P07_01190) - 254127..255020 (-) 894 WP_153973926.1 metal ABC transporter substrate-binding protein -
  E6P07_RS01195 (E6P07_01195) - 255062..256603 (-) 1542 WP_153973927.1 TonB-dependent receptor -
  E6P07_RS01200 (E6P07_01200) - 256727..257377 (+) 651 WP_246172881.1 hypothetical protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48825.18 Da        Isoelectric Point: 7.1764

>NTDB_id=357726 E6P07_RS01175 WP_153973923.1 251277..252650(+) (radA) [Thermochromatium tepidum ATCC 43061]
MATAPKPKSVYVCNDCGARYPKWTGQCQECGAWNSLLEVAEPLRRPAERGIGYAGVVASNKIETLSEVNPEERRRVESGI
GELDRVLGGGLVAGSVVLIGGDPGIGKSTLLLQACAALAADQPVLYVSGEESPQQIGLRARRLGLSGGGIRLLAETCVEQ
ILAQAELERPRVMVVDSIQTLYTETLQSAPGSVSQVRESAAHLVRFAKQRDTVVFLVGHVTKDGALAGPRVLEHMVDTVL
YFEGEHGGPFRILRSIKNRFGAVNELGVFAMGDQGLREVKNPSAIFLSRHEQPVAGSLVMVTREGTRPLLVEVQALVDES
PLANPRRVALGLDQNRLSMLLAVLHRHGGIGLFHQDVFVNVVGGVRITETAADLPVLLAVLSSDRDRPLPLDLAAFGEVG
LSGEVRPVPNGPDRLREAVKHGIRRAIVPKGNAPKEGVQGLEITVVRTLGEALGAAF

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=357726 E6P07_RS01175 WP_153973923.1 251277..252650(+) (radA) [Thermochromatium tepidum ATCC 43061]
ATGGCCACGGCTCCCAAGCCCAAGAGCGTCTATGTCTGCAACGACTGCGGGGCACGCTATCCGAAATGGACCGGTCAATG
CCAAGAGTGCGGCGCCTGGAACAGCCTCTTGGAGGTCGCCGAACCGCTGCGTCGTCCAGCCGAGCGCGGCATCGGCTATG
CCGGGGTCGTCGCTTCCAACAAGATCGAAACCCTGTCCGAGGTCAATCCGGAAGAGCGCCGGCGCGTCGAGAGCGGCATC
GGCGAGCTGGACCGGGTGCTCGGTGGCGGTCTGGTCGCCGGATCCGTCGTCCTGATTGGCGGTGATCCGGGCATCGGCAA
GTCGACCCTGTTGCTTCAGGCCTGTGCCGCGCTGGCTGCCGATCAGCCGGTGCTCTATGTCAGCGGCGAGGAGTCGCCCC
AGCAGATCGGCCTGCGTGCGCGCCGGCTGGGGTTGTCTGGCGGCGGCATCCGTCTCCTGGCCGAGACCTGTGTCGAGCAG
ATCCTGGCCCAGGCCGAGCTAGAGCGCCCGCGGGTGATGGTGGTCGACTCGATCCAGACCCTCTATACCGAGACGCTGCA
ATCGGCACCCGGGTCGGTGTCGCAGGTGCGCGAGTCGGCGGCACACCTGGTACGCTTCGCCAAGCAGCGTGACACCGTGG
TGTTCCTGGTCGGGCATGTGACCAAGGACGGCGCACTCGCCGGGCCGCGCGTGCTCGAACACATGGTCGACACCGTGCTC
TATTTCGAGGGCGAGCACGGTGGACCCTTCCGCATCCTGCGCTCGATCAAGAACCGCTTCGGCGCCGTCAACGAGCTGGG
CGTGTTCGCCATGGGCGATCAGGGACTGCGCGAGGTCAAGAATCCCTCGGCCATCTTTCTCTCGCGTCACGAACAACCGG
TCGCGGGCAGTCTGGTGATGGTCACGCGCGAGGGGACACGCCCGCTCTTGGTCGAGGTCCAGGCGCTGGTCGATGAGAGT
CCGCTGGCCAATCCGCGCCGGGTGGCGCTCGGGCTGGATCAGAACCGGCTGTCGATGCTGCTGGCGGTCTTGCACCGCCA
TGGCGGTATCGGTCTGTTCCATCAGGACGTCTTCGTCAATGTCGTCGGCGGGGTGCGCATCACCGAGACCGCCGCCGATC
TGCCGGTGCTCTTGGCGGTGCTCTCGAGCGATCGCGACCGCCCGCTGCCACTGGATCTGGCGGCCTTTGGCGAGGTCGGA
CTCTCGGGCGAGGTGCGGCCCGTCCCCAATGGCCCGGACCGGCTGCGCGAGGCGGTCAAGCACGGCATCCGGCGCGCTAT
CGTGCCCAAGGGCAACGCGCCCAAGGAGGGCGTCCAGGGCCTGGAGATCACGGTGGTCAGGACCCTGGGCGAGGCCTTGG
GGGCGGCGTTCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(11-36)

AAA domain (AAA_25)

(79-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6DVY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

99.781

0.488
  radA Streptococcus mitis SK321

46.491

99.781

0.464
  radA Streptococcus pneumoniae D39

46.389

100

0.464
  radA Streptococcus pneumoniae TIGR4

46.389

100

0.464
  radA Streptococcus pneumoniae R6

46.389

100

0.464
  radA Streptococcus pneumoniae Rx1

46.389

100

0.464
  radA Streptococcus mitis NCTC 12261

46.171

100

0.462

Multiple sequence alignment