Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   E6A57_RS08895 Genome accession   NZ_CP039266
Coordinates   1794043..1795839 (+) Length   598 a.a.
NCBI ID   WP_158182133.1    Uniprot ID   -
Organism   Lactobacillus crispatus strain DC21.1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1789043..1800839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6A57_RS08870 (E6A57_08865) - 1789959..1790339 (-) 381 WP_005725472.1 hypothetical protein -
  E6A57_RS08875 (E6A57_08870) - 1790484..1791035 (+) 552 WP_005722451.1 GNAT family N-acetyltransferase -
  E6A57_RS08880 (E6A57_08875) - 1791350..1791892 (+) 543 WP_013086911.1 PBECR4 domain-containing protein -
  E6A57_RS08885 (E6A57_08880) - 1791889..1792578 (-) 690 WP_060463889.1 DUF554 domain-containing protein -
  E6A57_RS08890 (E6A57_08885) - 1792644..1793876 (-) 1233 WP_158182132.1 LCP family protein -
  E6A57_RS08895 (E6A57_08890) pepF 1794043..1795839 (+) 1797 WP_158182133.1 oligoendopeptidase F Regulator
  E6A57_RS10560 (E6A57_08895) - 1796060..1796518 (-) 459 WP_420889447.1 transposase -
  E6A57_RS08905 (E6A57_08900) - 1796785..1798011 (+) 1227 WP_158181713.1 IS110 family transposase -
  E6A57_RS08910 (E6A57_08905) - 1798509..1799042 (-) 534 WP_158182134.1 hypothetical protein -
  E6A57_RS08915 (E6A57_08910) - 1799183..1800589 (-) 1407 WP_158181987.1 ISLre2-like element ISLcr1 family transposase -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 67935.81 Da        Isoelectric Point: 4.6979

>NTDB_id=357724 E6A57_RS08895 WP_158182133.1 1794043..1795839(+) (pepF) [Lactobacillus crispatus strain DC21.1]
MAIPNRNEVPEELKWDLTRIFKNDEEWEQAYAAAQEKVDQLGELKGTLAKSGKDLYEGLTKILAVKREVENIYVYATMSS
DVDTANSHYLGYVSRVQSLANQFEAATSFINPEILSIPSDKLAEFKQAEPRLKNYAHYLEMITNKRPHTLPAEQEKLIAD
AGDALGVSENTFNVLTNSDMEYGYVQDDDGNMEQLSDGLYSLLIQSQNRDVRKGAFDTLYATYGQFQNSLASTLSGVVKK
HNYNAKAHKYNSARQAALTANGVPEAVYDTLIKEVDSHLDLLHRYVALRKKILGLKDLQMWDMYVPLTGKPSLSYNFEEA
KEVAKKALKPLGEDYLEHVDYIFNNRVIDPVESKGKVTGAYSGGAYDTDPYELLNWENNIDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDHITDPKTRAFILNYYLDSFKGTLFRQTQFAVFEQFIHEADAKGEPLTA
DTLDDVYGQINQHYYGDSVEPGGDIALEWSRIPHFYYNFYVYQYATGFAAATALANKVVHGSQADRDAYLSFLKAGSSDY
PTEIMKRAGVDMTKPDYLEDAFKTFEKRLNEFESLIEK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=357724 E6A57_RS08895 WP_158182133.1 1794043..1795839(+) (pepF) [Lactobacillus crispatus strain DC21.1]
ATGGCGATACCAAACAGAAATGAAGTCCCAGAAGAACTTAAGTGGGATTTGACCCGAATTTTTAAAAATGATGAAGAATG
GGAACAGGCCTATGCAGCTGCCCAAGAAAAAGTCGATCAACTCGGTGAATTAAAAGGCACATTAGCAAAATCTGGCAAGG
ATTTGTACGAAGGTTTAACCAAGATTTTGGCCGTTAAGCGCGAGGTGGAAAATATTTATGTTTATGCCACCATGTCCAGT
GATGTTGATACGGCTAATTCACATTATCTAGGCTACGTCAGCCGAGTGCAAAGCTTAGCTAACCAATTTGAAGCCGCTAC
TAGTTTTATTAACCCAGAAATCTTGAGCATCCCTAGTGACAAGCTAGCTGAATTTAAGCAAGCTGAACCAAGATTAAAGA
ATTACGCTCACTACTTGGAAATGATTACTAATAAGCGCCCTCACACCCTGCCAGCTGAACAAGAAAAATTAATCGCTGAC
GCTGGGGATGCTTTGGGCGTTTCCGAAAATACTTTTAACGTTTTGACCAATTCCGACATGGAATACGGCTACGTCCAAGA
TGATGATGGCAATATGGAACAATTGTCCGACGGTTTGTACTCATTATTAATTCAATCACAAAACCGTGACGTCAGAAAAG
GTGCCTTTGATACGCTCTATGCCACATACGGTCAATTTCAAAATTCGCTAGCTTCAACCTTGTCCGGCGTTGTGAAAAAG
CACAACTATAACGCTAAAGCACACAAATATAACTCTGCTCGCCAAGCTGCCTTAACTGCAAATGGCGTACCTGAAGCAGT
TTACGATACTTTAATTAAAGAAGTTGATTCTCACCTTGATCTGCTTCACCGTTATGTTGCTTTGCGTAAGAAGATCTTGG
GCCTAAAAGACCTACAAATGTGGGACATGTATGTGCCGCTAACTGGGAAGCCTTCTCTTTCTTATAACTTTGAAGAAGCG
AAGGAAGTTGCTAAAAAAGCATTGAAGCCATTGGGTGAAGACTACTTAGAGCATGTTGACTACATCTTCAATAACCGCGT
AATCGATCCGGTTGAATCAAAAGGCAAGGTAACTGGGGCTTATTCTGGTGGTGCTTATGATACTGACCCATATGAACTGC
TCAACTGGGAAAATAATATTGACTCACTTTATACTTTAGTCCACGAAACTGGTCACTCTGTTCACTCCTGGTACACTCGC
AATACTCAACCTTACGTTTACGGCGACTATCCAATCTTTGTGGCTGAAATTGCTTCAACTACTAATGAAAATATTTTGAC
GGAATACTTCTTAGACCACATTACTGATCCCAAGACACGTGCGTTCATCTTGAACTACTACCTCGACTCATTCAAGGGAA
CTTTGTTTAGACAAACGCAATTCGCGGTGTTTGAACAATTTATCCATGAAGCCGACGCTAAGGGTGAACCGCTAACCGCT
GATACCTTGGATGATGTCTATGGTCAAATTAACCAACACTACTACGGCGATAGCGTTGAGCCAGGCGGCGACATTGCCTT
AGAATGGTCACGAATTCCGCACTTCTACTACAACTTCTACGTTTACCAATATGCGACTGGTTTTGCTGCTGCAACGGCTT
TGGCAAATAAGGTGGTGCACGGCAGCCAAGCTGACAGGGATGCCTACCTTAGCTTCTTGAAGGCTGGCTCAAGTGATTAT
CCAACCGAAATCATGAAACGCGCCGGCGTTGATATGACTAAGCCTGATTACTTAGAAGATGCATTCAAGACTTTTGAAAA
GCGGTTGAATGAATTTGAAAGCTTGATTGAGAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.684

99.331

0.513

Multiple sequence alignment