Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   E6A54_RS08575 Genome accession   NZ_CP039261
Coordinates   1719394..1721202 (+) Length   602 a.a.
NCBI ID   WP_158172699.1    Uniprot ID   -
Organism   Lactobacillus johnsonii strain DC22.2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1714394..1726202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6A54_RS08550 (E6A54_08600) - 1714775..1715557 (-) 783 WP_087712623.1 threonine/serine exporter family protein -
  E6A54_RS08555 (E6A54_08605) - 1715574..1717121 (-) 1548 WP_012846684.1 ABC-F family ATP-binding cassette domain-containing protein -
  E6A54_RS08560 (E6A54_08610) - 1717121..1717504 (-) 384 WP_098043207.1 hypothetical protein -
  E6A54_RS08565 (E6A54_08615) - 1717729..1718001 (+) 273 WP_012846686.1 hypothetical protein -
  E6A54_RS08570 (E6A54_08620) - 1718106..1719230 (-) 1125 WP_087284213.1 LCP family protein -
  E6A54_RS08575 (E6A54_08625) pepF 1719394..1721202 (+) 1809 WP_158172699.1 oligoendopeptidase F Regulator
  E6A54_RS08580 (E6A54_08630) - 1721271..1722782 (-) 1512 WP_199247303.1 L-lactate permease -
  E6A54_RS08585 (E6A54_08635) - 1722904..1723695 (-) 792 WP_087284204.1 metal ABC transporter permease -
  E6A54_RS08590 (E6A54_08640) - 1723695..1724354 (-) 660 WP_158172703.1 metal ABC transporter ATP-binding protein -
  E6A54_RS08595 (E6A54_08645) - 1724391..1725290 (-) 900 WP_012846692.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  E6A54_RS08600 (E6A54_08650) - 1725592..1725870 (-) 279 WP_011162513.1 ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68611.35 Da        Isoelectric Point: 4.6379

>NTDB_id=357708 E6A54_RS08575 WP_158172699.1 1719394..1721202(+) (pepF) [Lactobacillus johnsonii strain DC22.2]
MALPTRNEVSDDLKWDLSRVFKDDQEWDQEYNQVATEIKNLDRFKGNLAKSGQDLYEGITEILSVNRRLEKVYVYATMSS
DVDTSNTHYLGLVAKAQSLANQMSAAISFVDPEILSIPEETLAKFMQDEPRLKEYQHRLEQITKKRPHTLPASEEKIIAA
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNAQVHKYNSAREAALSENGVPTAVYDTLVKEVNSHLNLLHRYVSLRKKILGLSDLQMYDMYVPLTGEPSLSYNFEEA
KNEARRALAPLGKDYLEHVDYIFNNRVIDVVESQNKVTGAYSGGSYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHEADANGQPLTA
DVLDEFYGNLNQKYYGDSVEPGGEIAKEWARIPHFYYNFYVYQYATGFAAATALANNVVHGTDKERTAYINFLKAGSSDY
PTEIMKRAGVDMTKANYLKDAFNTFEKRLNEFEKIVNELKTI

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=357708 E6A54_RS08575 WP_158172699.1 1719394..1721202(+) (pepF) [Lactobacillus johnsonii strain DC22.2]
ATGGCTCTTCCAACAAGAAATGAAGTATCTGATGATCTCAAATGGGATCTTAGTCGTGTTTTTAAAGACGATCAGGAATG
GGATCAAGAATATAATCAGGTCGCAACCGAAATTAAAAATTTAGATAGATTTAAGGGAAATCTTGCTAAATCTGGTCAAG
ATTTATATGAAGGAATTACAGAAATTTTATCTGTAAATCGTCGTTTAGAAAAAGTGTACGTTTATGCTACTATGTCAAGC
GACGTTGATACTAGTAATACTCATTATCTAGGCCTTGTTGCTAAAGCTCAAAGCTTAGCTAACCAAATGAGTGCTGCTAT
CTCTTTTGTCGATCCTGAAATTTTATCTATCCCAGAAGAGACACTTGCTAAATTTATGCAAGATGAACCTCGTTTAAAAG
AGTATCAACATCGACTTGAACAAATTACTAAGAAACGTCCTCATACTTTACCAGCAAGTGAAGAAAAAATTATTGCCGCT
GCTGGAGATGCAATGGGAACTTCAGCTAATACTTTCAATGTTTTAACTAATTCTGATATGGAATATGGCTATGTTCAAGA
TGAAGATGGAGAGATGGTCCAATTATCTGATGGCTTATATTCACTTCTAATTCAGTCCCAAGATAGAAATGTTCGCAAAA
ATGCATTTGATGTTATGTATGCAAGCTATGGTCAGTTTGAAAATAGTCTCGCTTCAACTTTATCAGGTGAAGTAAAAGCC
CACAATTTTAATGCTCAAGTACATAAATATAATTCAGCTCGAGAGGCTGCTTTAAGTGAAAACGGCGTACCAACAGCTGT
TTACGATACATTGGTTAAAGAGGTAAATAGTCACCTCAACTTACTTCATCGCTACGTTAGTTTAAGAAAAAAGATTTTAG
GTCTTTCTGATTTACAAATGTATGATATGTATGTTCCATTAACAGGTGAGCCCAGTCTTTCTTATAACTTTGAAGAAGCA
AAAAATGAAGCTAGACGAGCCTTAGCGCCATTAGGAAAAGATTACCTCGAACATGTTGATTACATCTTTAATAATCGTGT
AATTGATGTGGTTGAAAGCCAAAATAAGGTAACAGGCGCTTATTCTGGTGGTTCCTATGATACTGATCCATATGAATTAT
TAAATTGGGAGGATAATCTTGATTCTCTATATACTCTAGTTCATGAAACTGGACACTCAGTACATTCCTGGTATACAAGA
AATACTCAACCATATGTATATGGAGACTACCCAATTTTTGTTGCTGAAATTGCATCAACAACTAATGAAAATATTTTAAC
TGAATACTTCTTAGATAAAATTACCGATCCTAAAACACGCGCATTTGTTTTGAATCACTATCTTGATTCATTTAAGGGTA
CACTTTTCCGTCAAACACAATTTGCAGAATTTGAGCAGTTTATTCATGAAGCCGACGCAAATGGTCAACCATTAACTGCC
GATGTTCTTGATGAATTTTACGGCAATTTAAACCAAAAATATTACGGTGATAGTGTAGAACCGGGCGGAGAGATTGCTAA
AGAATGGGCCCGTATTCCTCATTTCTATTACAACTTTTATGTTTACCAATATGCAACAGGCTTTGCTGCTGCTACAGCTC
TCGCAAATAATGTTGTTCATGGTACTGACAAAGAACGTACCGCTTATATTAATTTCTTAAAGGCTGGCTCTTCAGATTAT
CCAACAGAGATAATGAAACGTGCTGGTGTCGATATGACAAAGGCCAATTACTTAAAAGACGCATTTAATACTTTTGAAAA
ACGACTTAATGAGTTTGAAAAAATCGTTAATGAATTGAAAACAATCTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.351

98.339

0.505

Multiple sequence alignment