Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E5678_RS16165 Genome accession   NZ_CP039252
Coordinates   3521788..3523164 (+) Length   458 a.a.
NCBI ID   WP_136179473.1    Uniprot ID   A0A4P7REN7
Organism   Hydrogenophaga sp. PAMC20947     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3516788..3528164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5678_RS16135 (E5678_16130) - 3517193..3517987 (-) 795 WP_136179467.1 fumarylacetoacetate hydrolase family protein -
  E5678_RS16140 (E5678_16135) - 3517984..3518667 (-) 684 WP_136179468.1 fumarylacetoacetate hydrolase family protein -
  E5678_RS16145 (E5678_16140) hpaR 3518664..3519140 (-) 477 WP_136179469.1 homoprotocatechuate degradation operon regulator HpaR -
  E5678_RS16150 (E5678_16145) - 3519245..3520303 (+) 1059 WP_136179470.1 nitronate monooxygenase -
  E5678_RS16155 (E5678_16150) - 3520291..3520587 (+) 297 WP_136179471.1 antibiotic biosynthesis monooxygenase -
  E5678_RS16160 (E5678_16155) - 3520606..3521733 (-) 1128 WP_136179472.1 hypothetical protein -
  E5678_RS16165 (E5678_16160) radA 3521788..3523164 (+) 1377 WP_136179473.1 DNA repair protein RadA Machinery gene
  E5678_RS16170 (E5678_16165) - 3523233..3523643 (+) 411 WP_136179474.1 glycerate kinase -
  E5678_RS16175 (E5678_16170) - 3524005..3524724 (-) 720 WP_136179475.1 hypothetical protein -
  E5678_RS16180 (E5678_16175) - 3524850..3525791 (+) 942 WP_136179476.1 branched-chain amino acid transaminase -
  E5678_RS16185 (E5678_16180) - 3525805..3526011 (+) 207 WP_136179477.1 zinc-finger domain-containing protein -
  E5678_RS16190 (E5678_16185) - 3526269..3526562 (+) 294 WP_136179478.1 hypothetical protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48121.24 Da        Isoelectric Point: 6.9990

>NTDB_id=357639 E5678_RS16165 WP_136179473.1 3521788..3523164(+) (radA) [Hydrogenophaga sp. PAMC20947]
MAKDKTNYVCNECGGTSPKWLGKCPSCGAWNTLIESVAESSAPTKNRFASLAKTAEVTVLANIEASDVERTPTGHDELDR
VLGGGIVEGGVVLIGGDPGIGKSTLLLQALDSLQRSGQKTLYVTGEESGAQVALRSRRLGLEGSQVSVLAEIQLEKILAT
LDTTHPTVAVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRAAKASGTAIVLVGHVTKEGALAGPRVLEHMVDTVLYFEG
DTHSSFRLIRAIKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSQHSEPVPGSCVMVTLEGTRPMLVEIQALVDSGGPSP
RRLSVGLDRDRLAMLLAVLHRHAGVACMDQDVFVNAVGGVRISEPAADLAVMLAITSSLRGKALPKGFIAFGEVGLAGEV
RPAPRGQERLKEAAKLGFSVAVVPKANAPKKNDKAFEGLTIHGVDRIEDAMELARSLA

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=357639 E5678_RS16165 WP_136179473.1 3521788..3523164(+) (radA) [Hydrogenophaga sp. PAMC20947]
ATGGCCAAAGACAAAACCAATTACGTCTGCAACGAGTGCGGCGGCACCAGCCCAAAATGGTTGGGCAAATGCCCCAGTTG
TGGCGCCTGGAACACATTGATTGAATCCGTGGCGGAATCCAGCGCGCCCACCAAAAACCGGTTCGCCTCCTTGGCCAAGA
CCGCTGAAGTGACCGTGTTGGCCAACATCGAAGCCTCCGATGTCGAGCGCACGCCCACTGGACACGACGAGCTGGACCGC
GTGCTCGGGGGCGGTATCGTGGAAGGAGGCGTGGTCTTGATCGGTGGCGATCCTGGCATCGGAAAATCCACGCTGCTGCT
GCAAGCGCTGGATTCGCTGCAACGGTCTGGGCAAAAGACGCTGTACGTCACAGGTGAAGAAAGCGGCGCCCAGGTGGCAC
TGCGCTCACGCCGCCTTGGGCTGGAAGGCTCTCAGGTCAGCGTTCTGGCCGAAATCCAGCTGGAAAAAATCCTGGCCACA
CTGGATACCACCCACCCCACGGTCGCCGTGATCGACTCCATCCAGACCGTGTACTCCGACCAGCTCACCAGCGCACCGGG
CTCGGTGGCGCAGGTGCGCGAATGCGCGGCGCACCTGACCCGCGCGGCCAAAGCCAGCGGCACCGCCATCGTGCTCGTGG
GCCATGTGACCAAAGAAGGTGCGCTGGCCGGCCCCCGTGTGCTGGAGCACATGGTGGACACGGTGTTGTATTTCGAGGGC
GACACGCATTCCAGCTTCCGCCTGATCCGCGCCATCAAGAACCGCTTTGGCGCAGTCAACGAAATCGGCGTATTTGCCAT
GACGGAAAAGGGCCTCAAAGGGGTGTCCAACCCCAGTGCCATCTTTCTTTCCCAACATTCGGAACCCGTGCCCGGCAGCT
GCGTGATGGTCACCCTCGAAGGCACCCGTCCCATGCTGGTGGAAATTCAGGCGCTGGTCGACAGCGGCGGACCGTCCCCC
AGACGCCTGAGCGTGGGACTGGACCGCGACCGCCTGGCCATGTTGCTGGCGGTGTTGCACCGGCACGCCGGCGTCGCCTG
CATGGACCAGGACGTCTTCGTCAACGCCGTGGGCGGCGTGCGCATCAGCGAGCCCGCCGCCGATCTGGCCGTGATGCTGG
CCATCACCAGCAGCCTGCGTGGCAAAGCCCTGCCCAAGGGCTTCATTGCCTTTGGAGAAGTCGGTCTGGCGGGCGAGGTG
CGCCCGGCACCACGAGGCCAGGAGCGGCTGAAGGAGGCCGCCAAACTCGGCTTCAGTGTGGCGGTGGTACCCAAAGCGAA
TGCGCCCAAAAAGAACGACAAAGCCTTTGAGGGTCTGACGATCCATGGGGTCGACCGGATCGAAGACGCTATGGAACTGG
CCCGCAGCCTGGCCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(358-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P7REN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.571

99.345

0.483
  radA Streptococcus pneumoniae Rx1

48.598

93.45

0.454
  radA Streptococcus pneumoniae D39

48.598

93.45

0.454
  radA Streptococcus pneumoniae R6

48.598

93.45

0.454
  radA Streptococcus pneumoniae TIGR4

48.598

93.45

0.454
  radA Streptococcus mitis SK321

48.598

93.45

0.454
  radA Streptococcus mitis NCTC 12261

48.364

93.45

0.452

Multiple sequence alignment