Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   GR129_RS26095 Genome accession   NZ_CP047144
Coordinates   5832108..5832887 (-) Length   259 a.a.
NCBI ID   WP_145487479.1    Uniprot ID   -
Organism   Streptomyces sp. HF10     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5827108..5837887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR129_RS26080 (GR129_26080) - 5827200..5829122 (+) 1923 WP_159705644.1 IucA/IucC family protein -
  GR129_RS26085 (GR129_26085) - 5829154..5829951 (+) 798 WP_236576482.1 GNAT family N-acetyltransferase -
  GR129_RS26090 (GR129_26090) - 5830028..5832012 (+) 1985 Protein_5149 ATP-dependent DNA helicase -
  GR129_RS26095 (GR129_26095) dinR/lexA 5832108..5832887 (-) 780 WP_145487479.1 transcriptional repressor LexA Regulator
  GR129_RS26100 (GR129_26100) nrdR 5833474..5834043 (+) 570 WP_145487480.1 transcriptional regulator NrdR -
  GR129_RS26105 (GR129_26105) - 5834207..5837104 (+) 2898 WP_145487481.1 vitamin B12-dependent ribonucleotide reductase -
  GR129_RS36125 (GR129_26110) - 5837205..5837820 (-) 616 Protein_5153 protein kinase family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27993.71 Da        Isoelectric Point: 6.9854

>NTDB_id=357630 GR129_RS26095 WP_145487479.1 5832108..5832887(-) (dinR/lexA) [Streptomyces sp. HF10]
MTTTADSAAITAQDRSQGRVEPVHAMNEATNPEGPRRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAVSVQPTDTSGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=357630 GR129_RS26095 WP_145487479.1 5832108..5832887(-) (dinR/lexA) [Streptomyces sp. HF10]
GTGACCACCACCGCAGACAGTGCCGCCATCACCGCCCAGGACCGCTCCCAGGGCCGGGTCGAGCCGGTACATGCGATGAA
CGAAGCCACGAATCCCGAGGGGCCCCGGCGCTCCCTGCCGGGCCGACCTCCAGGCATCCGGGCGGACAGCTCCGGGCTGA
CCGACCGGCAGCGCCGGGTGATCGAGGTCATCAGGGACTCCGTGCAGCGGCGCGGGTACCCGCCGTCCATGCGGGAGATC
GGCCAGGCCGTCGGCCTCTCCAGCACCTCCTCCGTGGCACACCAGCTGATGGCGCTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGCCCGCGCGCCTATGAGGTGCGCGGCTCCGACCAGGCCGTGTCGGTGCAGCCCACGGACACCAGCGGCA
AGCCCGCCGCGTCGTACGTCCCGCTGGTCGGCCGGATCGCCGCCGGTGGGCCGATCCTCGCGGAGGAATCCGTGGAGGAC
GTCTTCCCGCTCCCCCGCCAGCTGGTCGGCGACGGTGAGCTGTTCGTCCTCAAGGTCGTCGGCGACTCCATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTGACCGTGCGCCGCCAGCCGGTCGCGGAGAACGGCGACATCGTGGCCGCCATGCTCG
ACGGCGAGGCCACGGTGAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTCCTCCCGCACAACGCGGCCTACGAGCCG
ATCCCCGGCGACGACGCCACCATCCTGGGCAAGGTGGTCGCCGTACTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.445

81.467

0.378