Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   GR129_RS24995 Genome accession   NZ_CP047144
Coordinates   5560532..5562760 (+) Length   742 a.a.
NCBI ID   WP_159705365.1    Uniprot ID   -
Organism   Streptomyces sp. HF10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5555532..5567760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR129_RS24985 (GR129_24985) - 5555635..5558502 (-) 2868 WP_159705362.1 tetratricopeptide repeat protein -
  GR129_RS24990 (GR129_24990) - 5558495..5560330 (-) 1836 WP_159708593.1 HSP90 family protein -
  GR129_RS24995 (GR129_24995) recG 5560532..5562760 (+) 2229 WP_159705365.1 ATP-dependent DNA helicase RecG Machinery gene
  GR129_RS25000 (GR129_25000) rsmD 5562867..5563454 (+) 588 WP_159705368.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GR129_RS25005 (GR129_25005) coaD 5563481..5563960 (+) 480 WP_216369648.1 pantetheine-phosphate adenylyltransferase -
  GR129_RS25010 (GR129_25010) - 5564025..5565224 (+) 1200 WP_159705371.1 cell division initiation protein -
  GR129_RS25015 (GR129_25015) - 5565376..5566020 (+) 645 WP_145485601.1 DUF177 domain-containing protein -
  GR129_RS25020 (GR129_25020) rpmF 5566023..5566196 (+) 174 WP_003951102.1 50S ribosomal protein L32 -
  GR129_RS25025 (GR129_25025) rnc 5566216..5567034 (+) 819 WP_145485600.1 ribonuclease III -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 80376.12 Da        Isoelectric Point: 6.4846

>NTDB_id=357626 GR129_RS24995 WP_159705365.1 5560532..5562760(+) (recG) [Streptomyces sp. HF10]
MDLVPALEEPLKQPLKSVLGPATAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHSFA
SSRAPRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHKDLLPGTRAMFAGKVSVFNHRLQLAHPAYELLRGDGEETAETWA
GALIPLYPATAKLESWKIGKAVQTVLPAAQEALDPLPPALREGRGLLPLPEALLKIHRPATKADIADARARLKWDEAFVL
QVALARRRYADAQLPAVARRPRADGLLAAFDDRLPFTLTEGQRKVSREIFADLATEHPMHRLLQGEVGSGKTLVALRAML
AVVDAGGQAAMLAPTEVLAQQHHRSVTEMMGDLAEGGMLGGTEHATKVVLLTGSMGAAARRKALLDLATGEAGIVIGTHA
LIEDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGRQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVV
PAADKPHFLARAWERVREEVENGHQAYVVCPRIGDDIEEAADPKKAAKKKSAEDEAEKRPPLAVLDVADHLAKGPLQGLR
VEVLHGRMHPDDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSE
MPEASAARQRLNAVAATLDGFELSRIDLEQRREGDVLGQAQSGARSSLRVLEVIEDEEVIGEARSEAMALVTANPDLDHL
PGLRTALDALLDEEREQYLEKG

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=357626 GR129_RS24995 WP_159705365.1 5560532..5562760(+) (recG) [Streptomyces sp. HF10]
ATGGATCTCGTGCCCGCACTGGAAGAACCACTGAAACAGCCACTGAAGTCAGTGCTCGGCCCCGCCACCGCGAAGGTGAT
GGCCGAGCACCTCGGCCTGCACACCGTCGGCGACCTCCTGCACCACTACCCGCGCAGGTACGAGGAGCGCGGCCAGCTCA
CCCACCTCGCCGACCTCCCCATGGACGAGCACGTCACCGTGGTCGCCCAGGTCGCCGACGCCCGCCTGCACTCCTTCGCC
TCCTCCCGGGCGCCCCGCGGCAAGGGCCAGCGCCTGGAGGTCACCATCACCGACGGCAGCGGCCGCCTCCAGCTGGTCTT
CTTCGGCAACGGCGTGCACAAGCCGCACAAGGACCTGCTGCCCGGCACCCGCGCGATGTTCGCCGGCAAGGTCTCCGTCT
TCAACCACCGCCTCCAGCTCGCCCACCCCGCCTACGAGTTGCTGCGCGGCGACGGCGAGGAGACCGCCGAGACCTGGGCG
GGCGCCCTGATCCCGCTCTACCCGGCCACCGCCAAACTGGAGTCCTGGAAGATCGGCAAGGCGGTGCAGACGGTCCTGCC
CGCCGCCCAGGAGGCCCTCGACCCGCTGCCGCCCGCCCTGCGCGAGGGCCGGGGGCTGCTCCCGCTCCCCGAGGCCCTGC
TCAAGATCCACCGCCCGGCCACCAAGGCCGACATCGCGGACGCCCGCGCCCGCCTCAAATGGGACGAGGCGTTCGTCCTC
CAGGTCGCCCTGGCCCGCCGCCGGTACGCGGACGCCCAGCTCCCGGCGGTCGCCCGCCGCCCGCGGGCCGACGGCCTCCT
GGCCGCCTTCGACGACCGGCTGCCGTTCACCCTCACCGAGGGCCAGCGGAAGGTCTCCCGCGAGATCTTCGCCGACCTCG
CCACCGAACACCCCATGCACCGGCTCCTCCAGGGCGAGGTCGGCAGCGGCAAGACGCTGGTCGCCCTGCGCGCCATGCTC
GCCGTGGTCGACGCGGGCGGCCAGGCCGCCATGCTCGCGCCCACCGAGGTGCTGGCCCAGCAGCACCACCGGTCGGTCAC
CGAGATGATGGGCGACCTCGCCGAGGGCGGCATGCTGGGCGGCACCGAGCACGCCACCAAGGTGGTGCTGCTCACCGGCT
CCATGGGCGCCGCGGCCCGCCGCAAGGCCCTGCTCGACCTGGCCACCGGCGAGGCCGGCATCGTCATCGGCACCCACGCC
CTGATCGAGGACAAGGTCCAGTTCCACGACCTCGGCCTGGTCGTCGTGGACGAACAGCACCGCTTCGGCGTGGAGCAGCG
CGACGCCCTGCGCGGCAAGGGCAGACAGCCCCCGCACCTCCTGGTCATGACGGCCACCCCGATCCCGCGCACGGTCGCCA
TGACCGTCTTCGGCGACCTGGAGACCTCCGTCCTCGACCAGCTCCCGGCGGGCCGCTCCCCGATCGCCAGCCATGTCGTC
CCGGCCGCCGACAAACCCCACTTCCTGGCCCGCGCCTGGGAGCGGGTGCGGGAAGAGGTGGAGAACGGCCATCAGGCGTA
CGTCGTCTGCCCCCGCATCGGGGACGACATCGAGGAGGCGGCCGACCCGAAGAAGGCCGCCAAGAAGAAGTCCGCCGAGG
ACGAGGCCGAGAAGCGCCCCCCGCTCGCCGTCCTCGACGTGGCCGACCACCTGGCCAAGGGCCCCCTCCAGGGCCTGCGG
GTCGAGGTGCTGCACGGCAGGATGCACCCCGACGACAAGGACGCCGTGATGCGCCGCTTCGCCGCGGGCGAGACCGACGT
CCTGGTCGCCACCACGGTCATCGAGGTCGGCGTGAACGTCCCGAACGCCACCGCGATGGTCATCATGGACGCCGACCGCT
TCGGCGTCTCCCAGCTCCACCAGCTGCGCGGCCGCGTGGGCCGCGGCTCCGCGCCCGGCCTGTGCCTGCTGGTCTCCGAG
ATGCCCGAGGCGAGCGCCGCCCGCCAGCGGCTGAACGCGGTCGCCGCCACCCTCGACGGCTTCGAGCTCTCCCGCATCGA
CCTCGAACAGCGCCGCGAGGGCGATGTCCTCGGCCAGGCCCAGTCCGGTGCCCGCTCCAGCCTGCGCGTCCTGGAGGTCA
TCGAGGACGAGGAGGTCATCGGCGAGGCACGGAGCGAGGCGATGGCCCTGGTGACGGCGAACCCGGACCTGGACCATCTG
CCGGGCCTGCGGACAGCGCTGGACGCGCTGCTGGACGAGGAGAGGGAGCAGTACCTGGAGAAGGGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(300-452)

Helicase conserved C-terminal domain (Helicase_C)

(554-629)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(65-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.77

94.205

0.365