Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   GR129_RS17765 Genome accession   NZ_CP047144
Coordinates   3990313..3991434 (+) Length   373 a.a.
NCBI ID   WP_159703088.1    Uniprot ID   -
Organism   Streptomyces sp. HF10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3985313..3996434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR129_RS17755 (GR129_17755) dnaN 3988039..3989169 (+) 1131 WP_145488817.1 DNA polymerase III subunit beta -
  GR129_RS17760 (GR129_17760) gnd 3989353..3990231 (+) 879 WP_145488819.1 decarboxylating 6-phosphogluconate dehydrogenase -
  GR129_RS17765 (GR129_17765) recF 3990313..3991434 (+) 1122 WP_159703088.1 DNA replication/repair protein RecF Machinery gene
  GR129_RS17770 (GR129_17770) - 3991431..3991967 (+) 537 WP_145488822.1 DciA family protein -
  GR129_RS17775 (GR129_17775) gyrB 3992390..3994438 (+) 2049 WP_145488824.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 40670.38 Da        Isoelectric Point: 8.3913

>NTDB_id=357604 GR129_RS17765 WP_159703088.1 3990313..3991434(+) (recF) [Streptomyces sp. HF10]
MHVTHLSLADFRSYARAEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPLVRLGAERAVIRAQVRQGDRQ
QLIELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARAPRMAGVRSDYERVLKQ
RNTLLKSAALARRHGGRTMDLSTLDVWDQHLAHAGAELLARRLDLIAALRPLADKAYEQLAPGGGPLALEYKPSAPGEAH
TREDLYPQLLAALAEARKQEIERGVTLVGPHRDDLVLKLGQLPAKGYASHGESWSYALALRLASYELLRAEGNEPVLVLD
DVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPQVLAGARYSVSGGAVERV

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=357604 GR129_RS17765 WP_159703088.1 3990313..3991434(+) (recF) [Streptomyces sp. HF10]
ATGCACGTCACGCATCTCTCGCTGGCCGACTTCCGTTCCTACGCGCGGGCCGAGGTCCCGCTCGACCCGGGCGTCACGGC
CTTCGTCGGGCCCAACGGCCAGGGCAAGACCAACCTGGTGGAGGCGGTCGGCTACCTGGCGACCCTGGGCAGCCACCGCG
TCGCCTCCGACGCGCCGCTGGTGCGCCTGGGCGCCGAGCGGGCCGTGATCAGGGCGCAGGTCCGCCAGGGCGACCGGCAG
CAGCTGATCGAGCTGGAGCTGAATCCCGGCCGCGCCAACCGCGCCCGGATCAACCGGTCCTCGCAGGTCAGACCCCGGGA
CGTGCTGGGCATCGTACGGACCGTGCTGTTCGCGCCCGAGGACCTCGCCCTGGTGAAGGGGGACCCCGGGGAGCGGCGCA
GGTTCCTGGACGAGCTGATCACCGCGCGTGCCCCGCGGATGGCCGGGGTGCGCTCCGACTACGAGCGGGTGCTCAAGCAG
CGCAACACGCTCCTGAAGTCCGCGGCGCTCGCGCGCCGGCACGGCGGGCGGACCATGGACCTGTCCACCCTCGACGTGTG
GGACCAGCACCTGGCGCACGCCGGGGCCGAGCTGCTCGCCCGGCGGCTCGATCTGATCGCCGCGCTGCGGCCGCTGGCCG
ACAAGGCGTACGAGCAGCTGGCCCCCGGCGGCGGCCCGCTCGCGCTGGAGTACAAGCCGTCCGCGCCCGGCGAGGCCCAC
ACCCGCGAGGACCTGTACCCGCAGCTGCTCGCCGCCCTGGCCGAGGCGCGCAAGCAGGAGATCGAGCGGGGCGTCACCCT
CGTCGGTCCTCATCGCGACGATCTGGTGCTGAAACTCGGCCAGTTGCCCGCCAAGGGGTACGCCTCGCACGGCGAGTCCT
GGTCGTACGCCCTCGCCCTGCGCCTCGCCTCGTACGAGCTGCTGCGCGCCGAGGGCAACGAGCCCGTCCTCGTCCTGGAC
GACGTCTTCGCCGAGCTGGACGCGCGCCGCCGCGAGCGGCTGGCCGAGCTGGTCGCGCCCGGCGAGCAGGTGCTGGTCAC
CGCCGCCGTGGACGACGACGTCCCGCAGGTGCTGGCCGGGGCGCGGTACTCCGTCTCGGGCGGGGCGGTGGAACGCGTAT
GA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.136

94.906

0.362