Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LL3_RS20210 Genome accession   NC_017190
Coordinates   3985651..3986502 (-) Length   283 a.a.
NCBI ID   WP_014471333.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LL3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3980651..3991502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL3_RS20185 (LL3_04238) - 3980857..3982860 (-) 2004 WP_014472421.1 molybdopterin-dependent oxidoreductase -
  LL3_RS20190 (LL3_04239) - 3982907..3983113 (-) 207 WP_004392973.1 DUF951 domain-containing protein -
  LL3_RS20195 (LL3_04240) - 3983199..3984203 (-) 1005 WP_041481692.1 membrane protein -
  LL3_RS20200 (LL3_04241) - 3984377..3984787 (+) 411 WP_013354268.1 GNAT family N-acetyltransferase -
  LL3_RS20205 (LL3_04242) yyaC 3985007..3985621 (+) 615 WP_013354269.1 spore protease YyaC -
  LL3_RS20210 (LL3_04243) spo0J 3985651..3986502 (-) 852 WP_014471333.1 ParB/RepB/Spo0J family partition protein Regulator
  LL3_RS20215 (LL3_04244) soj 3986495..3987256 (-) 762 WP_004392964.1 sporulation initiation inhibitor protein Soj -
  LL3_RS20220 (LL3_04245) noc 3987555..3988406 (-) 852 WP_007615083.1 nucleoid occlusion protein -
  LL3_RS20225 (LL3_04246) rsmG 3988528..3989247 (-) 720 WP_013354272.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LL3_RS20230 (LL3_04247) mnmG 3989261..3991147 (-) 1887 WP_004392959.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 32338.29 Da        Isoelectric Point: 8.3472

>NTDB_id=35759 LL3_RS20210 WP_014471333.1 3985651..3986502(-) (spo0J) [Bacillus amyloliquefaciens LL3]
MAKGGLGKGINALFNQVDLSEETVEEIKISDLRPNPYQPRKQFDDESLAELKESIIQHGILQPIIVRKSLKGYDIVAGER
RYRAAKLAGKETVPAIVRELSESLMREIALLENLQREDLSPLEEALAYDSLLKHLDITQEQLAKRLGKSRPHIANHLRLL
TLPESIQNLIAEGTLSMGHGRTLLGLKNKNKLEPLVKKVVEEQLNVRQLEQLIQQLNSNVPRETKKKEPVQDVVLKERES
YLQNYFGTTVNIKRQKKKGKIEIEFFSNEDLERILELLSEREA

Nucleotide


Download         Length: 852 bp        

>NTDB_id=35759 LL3_RS20210 WP_014471333.1 3985651..3986502(-) (spo0J) [Bacillus amyloliquefaciens LL3]
ATGGCTAAAGGCGGGCTCGGAAAAGGGATTAATGCGTTGTTTAATCAAGTTGATTTGTCTGAAGAGACAGTGGAAGAGAT
TAAGATCAGTGATTTACGCCCCAATCCTTATCAGCCAAGAAAACAATTTGATGATGAGTCATTAGCTGAACTGAAGGAAT
CCATCATTCAGCATGGCATTCTTCAGCCCATTATCGTGAGAAAATCATTGAAGGGCTACGATATTGTAGCCGGCGAACGC
CGTTATCGCGCCGCAAAACTTGCCGGTAAAGAGACAGTGCCGGCTATCGTGCGGGAGTTATCTGAATCGCTGATGCGGGA
AATCGCCCTATTGGAGAACCTTCAGCGGGAAGATTTATCACCGCTTGAAGAAGCTCTTGCATATGATTCACTGCTGAAGC
ATTTGGATATTACGCAGGAACAGCTCGCTAAACGGCTCGGGAAAAGCAGACCTCATATTGCCAACCATTTAAGACTGCTG
ACGCTTCCTGAAAGCATCCAGAACCTCATTGCAGAAGGTACGTTATCCATGGGGCACGGCAGAACCCTGCTCGGTTTGAA
AAATAAAAACAAGCTTGAACCGCTTGTGAAGAAAGTGGTTGAAGAACAGCTTAACGTCCGTCAGCTTGAGCAGCTCATTC
AGCAATTAAACAGTAATGTTCCACGTGAAACAAAGAAAAAAGAACCTGTTCAAGATGTTGTGTTAAAAGAGCGGGAATCG
TATTTGCAAAATTACTTCGGAACAACAGTCAATATTAAGAGACAAAAGAAAAAGGGGAAAATTGAGATTGAGTTTTTCTC
AAATGAAGACCTTGAACGTATCCTTGAGCTTTTGTCTGAAAGAGAAGCGTAA

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(164-215)

ParB/Sulfiredoxin domain (ParB_N)

(25-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.538

91.873

0.382

Multiple sequence alignment