Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GLX30_RS24130 Genome accession   NZ_CP047140
Coordinates   5457110..5458843 (-) Length   577 a.a.
NCBI ID   WP_159692261.1    Uniprot ID   -
Organism   Streptomyces sp. Tu 2975     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5452110..5463843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLX30_RS24110 (GLX30_24240) - 5452242..5453300 (-) 1059 WP_279632606.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  GLX30_RS35460 - 5453221..5453397 (-) 177 WP_244258273.1 hypothetical protein -
  GLX30_RS24115 (GLX30_24245) - 5453394..5453834 (-) 441 WP_244258274.1 hypothetical protein -
  GLX30_RS24120 (GLX30_24250) - 5454023..5455123 (+) 1101 WP_159692257.1 RNA polymerase sigma factor -
  GLX30_RS24125 (GLX30_24255) rcrQ 5455191..5457113 (-) 1923 WP_159692259.1 ABC transporter ATP-binding protein Regulator
  GLX30_RS24130 (GLX30_24260) rcrP 5457110..5458843 (-) 1734 WP_159692261.1 ABC transporter ATP-binding protein Regulator
  GLX30_RS24135 (GLX30_24265) - 5458961..5460406 (-) 1446 WP_159692263.1 FGGY family carbohydrate kinase -
  GLX30_RS24140 (GLX30_24270) - 5460474..5460773 (-) 300 WP_159692265.1 YtxH domain-containing protein -
  GLX30_RS24160 (GLX30_24290) - 5461461..5462138 (-) 678 WP_159692267.1 histone deacetylase -
  GLX30_RS24165 (GLX30_24295) - 5462233..5462649 (-) 417 WP_159692269.1 VOC family protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62446.58 Da        Isoelectric Point: 5.4216

>NTDB_id=357558 GLX30_RS24130 WP_159692261.1 5457110..5458843(-) (rcrP) [Streptomyces sp. Tu 2975]
MLIRLLRTYLRPYKKPIGFLVALQLLQTSATLYLPTLNADIIDNGVVKGDTGYILALGALMIGVSVVQVLCNIGAVFYGA
RTAAALGRDVRADIFGRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIVMALGQDVPLSAV
LLAVVPVLGICVSLIVKKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDEYEKGRFREANQELTDVSMSTGRLMAL
MFPTVMTVVNVSSVAVVWFGAQRIDSGAIQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIQEVLDTDSSVVP
PLAPVTELRSRGQLEVRGVDFRYPGAEASVLRGVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTGGEVLVDGVDVR
ELEPALMARTVSLVPQKPYLFSGTVATNLRYGKPDASDEELWQALETAQAADFVRALEGGLNAPVAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALREALARETSGATVVIVAQRVSTIRDADRIVVLDEGRVVGTGSHHELMESN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=357558 GLX30_RS24130 WP_159692261.1 5457110..5458843(-) (rcrP) [Streptomyces sp. Tu 2975]
GTGCTGATACGACTGCTGCGGACCTATCTCCGTCCGTACAAGAAACCCATTGGCTTCCTGGTGGCGCTGCAACTGCTGCA
GACCAGCGCCACCCTCTATCTGCCCACCCTGAACGCGGACATCATTGACAACGGTGTCGTCAAGGGCGACACCGGATACA
TCCTGGCCCTCGGCGCCCTGATGATCGGCGTCAGCGTCGTCCAGGTGCTCTGCAACATCGGGGCCGTGTTCTACGGGGCG
CGGACGGCCGCCGCTCTCGGGCGCGACGTCCGTGCCGACATCTTCGGCCGGGTGCAGAGCTTCTCCGCCCGTGAGGTCGG
CCACTTCGGGGCGCCGTCCCTCATCACCCGTACCACCAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGGCGTTCA
CACTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCGTGATGGCGCTCGGCCAGGACGTGCCGCTGTCGGCGGTG
CTGCTCGCGGTCGTGCCGGTGCTCGGCATCTGCGTCTCGCTGATCGTGAAGAAGATGCGGCCGCTGTTCCGCACCATGCA
GGAGCGGCTCGACACCGTGAACCGGGTACTGCGCGAGCAGATCACCGGCAACCGCGTGATCAGGGCCTTCGTACGGGACG
AGTACGAGAAGGGGCGCTTCCGCGAGGCGAATCAGGAGCTGACCGACGTCTCGATGTCCACAGGCCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTCTCCTCGGTCGCCGTCGTCTGGTTCGGCGCCCAGCGCATCGACAGCGG
TGCCATACAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCGGAGCGCATCCAGGAGGTGCTGGACACCGACTCGAGCGTGGTGCCG
CCGCTCGCTCCGGTGACGGAGCTGCGCAGCCGCGGTCAGCTGGAGGTACGGGGCGTCGACTTCCGCTACCCCGGGGCCGA
GGCGTCGGTGCTGCGGGGCGTCGACCTGGTGGCACGCCCGGGCGAGACGACCGCGATCATCGGCTCCACGGGCAGCGGCA
AGTCGACGCTGCTCGGCCTGGTGCCGCGGCTGTTCGACGTGACGGGCGGGGAGGTGCTCGTCGACGGGGTCGACGTGCGG
GAGCTCGAGCCGGCGCTGATGGCGAGGACCGTGAGTCTCGTTCCGCAGAAGCCGTACCTCTTCTCCGGGACCGTGGCGAC
CAACCTCCGCTACGGCAAGCCCGACGCGAGCGACGAAGAACTGTGGCAGGCGCTCGAGACGGCCCAGGCGGCCGACTTCG
TACGCGCGCTGGAGGGCGGGCTCAACGCCCCCGTCGCCCAGGGCGGCACGAACGTCTCCGGCGGGCAGCGCCAGCGGCTC
GCGATCGCGAGGACGCTCGTCCAGCGGCCGGAGATCTACCTCTTCGACGATTCGTTCTCGGCACTCGACTACGCCACGGA
CGCGGCGCTGCGTGAGGCGCTCGCCCGTGAGACGTCGGGCGCGACGGTCGTGATCGTCGCCCAGCGGGTGTCGACGATCC
GCGACGCGGACCGGATCGTGGTCCTCGACGAGGGCAGGGTCGTGGGGACCGGAAGCCATCACGAGCTGATGGAGAGCAAC
GAGACCTACCGAGAGATCGTGCTCTCGCAGCTGACGGAGGCTGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.091

95.321

0.392