Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GLX30_RS24125 Genome accession   NZ_CP047140
Coordinates   5455191..5457113 (-) Length   640 a.a.
NCBI ID   WP_159692259.1    Uniprot ID   -
Organism   Streptomyces sp. Tu 2975     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5450191..5462113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLX30_RS24105 (GLX30_24235) dnaG 5450290..5452200 (+) 1911 WP_159692253.1 DNA primase -
  GLX30_RS24110 (GLX30_24240) - 5452242..5453300 (-) 1059 WP_279632606.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  GLX30_RS35460 - 5453221..5453397 (-) 177 WP_244258273.1 hypothetical protein -
  GLX30_RS24115 (GLX30_24245) - 5453394..5453834 (-) 441 WP_244258274.1 hypothetical protein -
  GLX30_RS24120 (GLX30_24250) - 5454023..5455123 (+) 1101 WP_159692257.1 RNA polymerase sigma factor -
  GLX30_RS24125 (GLX30_24255) rcrQ 5455191..5457113 (-) 1923 WP_159692259.1 ABC transporter ATP-binding protein Regulator
  GLX30_RS24130 (GLX30_24260) rcrP 5457110..5458843 (-) 1734 WP_159692261.1 ABC transporter ATP-binding protein Regulator
  GLX30_RS24135 (GLX30_24265) - 5458961..5460406 (-) 1446 WP_159692263.1 FGGY family carbohydrate kinase -
  GLX30_RS24140 (GLX30_24270) - 5460474..5460773 (-) 300 WP_159692265.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 69244.53 Da        Isoelectric Point: 4.8336

>NTDB_id=357557 GLX30_RS24125 WP_159692259.1 5455191..5457113(-) (rcrQ) [Streptomyces sp. Tu 2975]
MSGPGGRMMTGPVERSMDFKGSGKRLLRQLAPERATLWVMLAAGVLSVAFSVVGPKILGRATDLIFAGIVGRQMPAGTSK
EQTLEGMRRSGDDGLADMLSGVDFVPGEGIDFNAVGDVLLMALAVFVAAGLMMLVATRLSITVINRTVYRMREDVQAKLS
RLPLSYFDKAKRGEVLSRATNDIDNISQTLQQTMGQMINSLLTIVGVLAMMFWISPLLALVALVTVPVSVFVAAKVGKRS
QPQFVAQWKSTGALNAHIEEMYTGHSLVKVFGRQEESAQGFAEQNEALYEAGFRAQFNSGMMQPLMFFISNLNYVLVAVV
GGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQETDAPSSERLERPRGQVSLEKV
SFRYDPDKPLIEDLSLAVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDIAKMSREDLRSGIGMVLQDTWL
FGGTIAENIAYGASREVTREEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMEDGSIVEQGTHEELLAADGAYARLYTAQFAQAVVEVE

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=357557 GLX30_RS24125 WP_159692259.1 5455191..5457113(-) (rcrQ) [Streptomyces sp. Tu 2975]
ATGAGCGGGCCGGGTGGACGCATGATGACGGGTCCCGTCGAGCGATCGATGGACTTCAAGGGCTCGGGCAAGCGGCTGCT
GCGGCAGCTCGCGCCCGAGCGGGCGACGCTGTGGGTGATGCTCGCGGCCGGTGTGCTGAGCGTCGCCTTCTCGGTGGTCG
GGCCGAAGATCCTCGGCCGGGCGACCGACCTGATCTTCGCCGGGATCGTCGGCCGGCAGATGCCGGCGGGCACCTCCAAG
GAACAGACGCTGGAGGGCATGCGGCGGAGCGGCGACGACGGTCTCGCGGACATGCTCTCCGGTGTGGACTTCGTCCCCGG
AGAGGGCATCGACTTCAACGCCGTCGGTGACGTCCTGCTCATGGCACTGGCGGTGTTCGTGGCCGCCGGACTGATGATGC
TGGTGGCGACGCGACTGTCGATCACGGTCATCAACCGCACCGTGTACCGGATGCGCGAGGACGTACAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACAAGGCCAAGCGCGGTGAGGTGCTCAGCCGGGCCACCAACGACATCGACAACATCTC
GCAGACCCTGCAGCAGACGATGGGTCAGATGATCAACTCGCTGCTCACCATCGTCGGTGTGCTGGCGATGATGTTCTGGA
TCTCACCGCTGCTGGCGCTGGTCGCTCTGGTGACGGTGCCCGTGTCCGTCTTCGTGGCGGCGAAGGTCGGCAAGCGGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGTCGACGGGCGCTCTCAACGCCCATATCGAGGAGATGTACACCGGCCACTCGCT
GGTGAAGGTCTTCGGTCGCCAGGAGGAGTCGGCGCAGGGCTTCGCCGAGCAGAACGAGGCACTGTACGAGGCCGGGTTCA
GGGCGCAGTTCAACAGCGGCATGATGCAGCCGCTGATGTTCTTCATCTCCAACCTGAACTACGTGCTGGTGGCGGTCGTC
GGCGGTCTGCGGGTCGCGTCCGGTTCGCTGTCGATCGGTGATGTGCAGGCGTTCATCCAGTACTCGCGGCAGTTCTCGAT
GCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTCCAGTCGGGCGTCGCGTCCGCCGAGCGGATCTTCGAGCTGCTGG
ACGCCGAGGAGCAGGAGACGGACGCCCCGTCCTCGGAGCGGCTCGAGCGGCCCCGCGGCCAGGTCTCGCTGGAGAAGGTG
TCGTTCCGCTACGACCCCGACAAGCCTCTCATCGAGGACCTGTCGCTCGCCGTCGAGCCGGGGCACACCGTCGCCATCGT
CGGCCCGACGGGTGCGGGCAAGACCACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACCGGCGGGCGGATCGCGC
TCGACGGCGTGGACATCGCCAAGATGTCCCGTGAGGACCTGCGTTCCGGGATAGGAATGGTGCTCCAGGACACCTGGCTG
TTCGGGGGCACGATCGCGGAGAACATCGCGTACGGAGCCTCACGTGAGGTCACTCGCGAGGAGATCGAGGAGGCGGCGCG
GGCCGCGCACGCCGACCGGTTCGTCCGCACGCTGCCCGACGGCTACGACACCGTCATCGACGACGAGGGCTCGGGCGTCA
GCGCGGGCGAGAAACAGCTGATCACCATCGCGCGGGCGTTCCTGTCGGATCCGGTGATCCTGGTGCTGGACGAGGCGACG
AGCTCCGTCGACACCCGCACGGAGGTGCTGATCCAGAAGGCGATGGCGCGGCTCGCGCACGGGCGGACGAGCTTCGTGAT
CGCGCACCGTCTCTCGACCATCCGGGACGCGGACGTGATTCTGGTGATGGAGGACGGGTCGATCGTCGAACAGGGCACGC
ACGAAGAGTTGTTGGCGGCGGACGGGGCGTATGCCCGGCTGTACACGGCACAGTTCGCGCAGGCGGTGGTGGAAGTGGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(39-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.032

96.406

0.386