Detailed information NTG0357553

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: PsalSR1_RS19270
• Genome accession: NZ_CP039227
• Coordinates: 3327939..3328892 (+)
• Length: 317 a.a.
• NCBI ID: WP_230388980.1
• Uniprot ID: -
• Organism: Piscirickettsia salmonis strain SR1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3322939..3333892

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PsalSR1_RS19245 (PsalSR1_03851)	-	3323141..3323413 (-)	273	WP_155066454.1	hypothetical protein	-
PsalSR1_RS19250 (PsalSR1_03852)	-	3323669..3324196 (-)	528	WP_155066453.1	hypothetical protein	-
PsalSR1_RS19255 (PsalSR1_03853)	-	3324308..3324532 (-)	225	WP_155081103.1	transposase	-
PsalSR1_RS19260 (PsalSR1_03854)	-	3324941..3326158 (-)	1218	WP_155589601.1	YbfB/YjiJ family MFS transporter	-
PsalSR1_RS19265 (PsalSR1_03855)	-	3326391..3326831 (-)	441	WP_196427360.1	hypothetical protein	-
PsalSR1_RS27440	-	3326858..3326983 (+)	126	WP_282434982.1	hypothetical protein	-
PsalSR1_RS27445 (PsalSR1_03856)	-	3327119..3327247 (-)	129	WP_282434983.1	hypothetical protein	-
PsalSR1_RS19270 (PsalSR1_03857)	pilA	3327939..3328892 (+)	954	WP_230388980.1	signal recognition particle-docking protein FtsY	Machinery gene
PsalSR1_RS19275 (PsalSR1_03858)	-	3329156..3330880 (-)	1725	WP_155081358.1	hypothetical protein	-
PsalSR1_RS19280 (PsalSR1_03859)	-	3330882..3331088 (-)	207	WP_155081359.1	hypothetical protein	-
PsalSR1_RS19285 (PsalSR1_03860)	-	3331814..3332113 (-)	300	WP_282435075.1	transposase	-
PsalSR1_RS19290	-	3332263..3332502 (-)	240	WP_155081107.1	hypothetical protein	-
PsalSR1_RS19295 (PsalSR1_03861)	-	3332429..3332779 (-)	351	WP_155066739.1	IS630 transposase-related protein	-
PsalSR1_RS19300 (PsalSR1_03862)	-	3332834..3333859 (-)	1026	WP_155081360.1	hypothetical protein	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 34410.46 Da
• Isoelectric Point: 6.5046

>NTDB_id=357553 PsalSR1_RS19270 WP_230388980.1 3327939..3328892(+) (pilA) [Piscirickettsia salmonis strain SR1]
MEKSNTNSNNQKKQGLFARLKSGLSKTRENLASGITTLLIGEKKIDDELLEDLETQLLMADVGIDATTHIITDLTKRLDR
NELTDTQKAMEALKENLSGLLDPCNIPLEIPETKDPFVILVIGVNGAGKTTTIGKLAKYYQNQGKSVMLAAGDTFRAAAV
EQLQVWGERNDIPVVAQHTGADSASVIFDAYNSAKAHGCDILIADTAGRLHTQSNLMEELKKVKRVLGKVDNTAPHEVLL
VLDSGTGQNAINQAEQFHQAVNVSGIVMTKLDGTAKGGVIFAIAKKMKLPIRYIGVGEKIDDLRPFKSDEFIKALFG

Nucleotide

• Length: 954 bp

>NTDB_id=357553 PsalSR1_RS19270 WP_230388980.1 3327939..3328892(+) (pilA) [Piscirickettsia salmonis strain SR1]
ATTGAAAAAAGCAACACCAATAGTAATAACCAGAAAAAGCAAGGCTTATTCGCCCGCTTAAAATCTGGTCTCAGTAAGAC
CCGTGAAAATCTGGCTTCAGGTATTACTACACTTTTAATCGGTGAGAAAAAAATCGATGATGAGCTGCTGGAAGATTTAG
AAACTCAGCTACTCATGGCAGACGTCGGCATTGATGCAACGACCCATATCATTACTGACCTAACCAAGCGTCTTGATCGA
AACGAACTTACAGATACCCAAAAAGCGATGGAAGCGCTCAAAGAAAATTTATCTGGGCTGCTCGATCCATGCAATATTCC
CCTAGAAATTCCAGAAACAAAAGATCCCTTTGTGATTTTAGTCATCGGCGTCAATGGCGCAGGGAAAACTACAACCATTG
GTAAACTTGCCAAGTATTACCAAAACCAAGGCAAAAGCGTCATGCTCGCTGCAGGTGATACCTTCCGTGCCGCCGCGGTT
GAGCAATTACAAGTCTGGGGAGAGCGTAACGATATTCCGGTAGTTGCCCAACATACAGGTGCTGATAGCGCATCAGTAAT
TTTCGATGCGTATAACTCAGCCAAAGCGCATGGTTGTGATATTTTAATTGCCGATACCGCAGGCCGACTGCATACACAAA
GCAACTTAATGGAAGAGCTTAAAAAAGTAAAGCGCGTGCTTGGCAAAGTCGACAATACAGCGCCGCATGAGGTTTTACTA
GTCCTAGACTCAGGCACCGGACAAAACGCTATTAATCAAGCTGAGCAGTTTCATCAGGCTGTCAATGTATCAGGCATTGT
CATGACTAAACTCGATGGCACGGCTAAAGGTGGGGTCATTTTTGCTATCGCTAAGAAAATGAAGTTACCTATCCGTTATA
TTGGCGTCGGCGAAAAAATTGATGATCTACGCCCTTTTAAATCAGATGAATTTATTAAGGCTTTATTTGGCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (116-316)

• SRP54-type protein, helical bundle domain (SRP54_N) (33-97)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	54.369	97.476	0.53