Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GLX30_RS13090 Genome accession   NZ_CP047140
Coordinates   3022821..3023822 (-) Length   333 a.a.
NCBI ID   WP_159695009.1    Uniprot ID   -
Organism   Streptomyces sp. Tu 2975     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3017821..3028822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLX30_RS13070 (GLX30_13145) - 3017841..3018035 (-) 195 WP_005312422.1 hypothetical protein -
  GLX30_RS13075 (GLX30_13150) - 3018205..3020364 (+) 2160 WP_159687710.1 prolyl oligopeptidase family serine peptidase -
  GLX30_RS13080 (GLX30_13155) - 3020373..3021539 (-) 1167 WP_159687712.1 hypothetical protein -
  GLX30_RS13085 (GLX30_13160) - 3021758..3022828 (-) 1071 WP_159687714.1 dipeptide ABC transporter ATP-binding protein -
  GLX30_RS13090 (GLX30_13165) amiE 3022821..3023822 (-) 1002 WP_159695009.1 ABC transporter ATP-binding protein Regulator
  GLX30_RS13095 (GLX30_13170) - 3023867..3024865 (-) 999 WP_159687716.1 ABC transporter permease -
  GLX30_RS13100 (GLX30_13175) - 3024858..3025781 (-) 924 WP_159687718.1 ABC transporter permease -
  GLX30_RS13105 (GLX30_13180) - 3025855..3027483 (-) 1629 WP_159687720.1 ABC transporter substrate-binding protein -
  GLX30_RS13110 (GLX30_13185) - 3027551..3028495 (-) 945 WP_159687722.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36390.03 Da        Isoelectric Point: 5.6173

>NTDB_id=357530 GLX30_RS13090 WP_159695009.1 3022821..3023822(-) (amiE) [Streptomyces sp. Tu 2975]
MSAEPDTPGRLLDVRDLHVEFRTRDGVARAVNGVNYTVDAGETLAVLGESGSGKSVTAQAVMGILDMPPGRITGGEILFK
GQDLLKMREDERRKIRGAGMAMIFQDALSSLNPVLSVGDQLGEMFIVHQGLSRKDAKARAVELMDRVRIPAAKERVGQYP
HQFSGGMRQRIMIAMALSLEPDLIIADEPTTALDVTVQAQVMELLAELQRELDMGLILITHDLGVVADVADKIAVMYAGR
IVETAPVHDIYRAPAHPYTKGLLESIPRLDQKGQELYAIKGLPPNLMHIPPGCAFNPRCPMAQDVCRTDVPPLYEVNEQR
GSACHFWEAAIHG

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=357530 GLX30_RS13090 WP_159695009.1 3022821..3023822(-) (amiE) [Streptomyces sp. Tu 2975]
ATGTCCGCGGAACCGGACACGCCAGGCCGTCTGCTCGACGTACGCGACCTGCACGTGGAGTTCCGCACCCGCGACGGCGT
GGCCAGAGCGGTCAACGGCGTGAACTACACCGTCGACGCGGGCGAGACGCTCGCCGTGCTGGGCGAGTCGGGGTCGGGCA
AGTCGGTCACCGCCCAGGCCGTCATGGGCATCCTCGACATGCCGCCCGGCAGGATCACCGGGGGCGAGATCCTCTTCAAG
GGCCAGGACCTGCTGAAGATGCGGGAGGACGAACGGCGGAAGATCAGGGGCGCCGGAATGGCCATGATCTTCCAGGACGC
CCTGTCCTCCCTCAACCCCGTCCTGAGCGTCGGGGACCAGCTGGGGGAGATGTTCATCGTCCACCAGGGCCTGTCCCGCA
AGGATGCCAAGGCCAGGGCCGTGGAGCTGATGGACCGGGTCCGTATCCCCGCGGCCAAGGAACGCGTCGGCCAGTACCCG
CACCAGTTCTCCGGCGGCATGCGCCAGCGCATCATGATCGCGATGGCCCTGTCGCTGGAGCCGGACCTGATCATCGCCGA
CGAGCCGACCACCGCGCTCGACGTGACCGTCCAGGCGCAGGTCATGGAGCTGCTCGCGGAGCTCCAGCGCGAACTGGACA
TGGGGCTGATCCTGATCACCCACGACCTCGGCGTCGTCGCCGACGTCGCGGACAAGATCGCGGTGATGTACGCCGGGCGG
ATCGTGGAGACCGCCCCCGTCCACGACATCTACCGAGCGCCCGCTCACCCCTATACCAAGGGCCTGCTCGAATCGATCCC
TCGCCTGGACCAGAAGGGGCAGGAGCTCTACGCCATCAAGGGCCTGCCGCCCAACCTGATGCACATCCCGCCCGGCTGCG
CCTTCAACCCGCGCTGTCCGATGGCCCAGGACGTGTGCCGGACCGACGTACCGCCGCTGTACGAGGTGAACGAGCAGCGC
GGCAGCGCGTGCCACTTCTGGGAGGCGGCGATCCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(242-306)

ABC transporter (ABC_tran)

(32-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

48.22

92.793

0.447
  amiE Streptococcus thermophilus LMG 18311

47.573

92.793

0.441
  amiE Streptococcus thermophilus LMD-9

47.573

92.793

0.441
  oppD Streptococcus mutans UA159

46.349

94.595

0.438