Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   GLX30_RS10755 Genome accession   NZ_CP047140
Coordinates   2471722..2473908 (-) Length   728 a.a.
NCBI ID   WP_159686599.1    Uniprot ID   -
Organism   Streptomyces sp. Tu 2975     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2466722..2478908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLX30_RS10725 (GLX30_10775) rnc 2467530..2468426 (-) 897 WP_159686587.1 ribonuclease III -
  GLX30_RS10730 (GLX30_10780) rpmF 2468446..2468619 (-) 174 WP_026165248.1 50S ribosomal protein L32 -
  GLX30_RS10735 (GLX30_10785) - 2468622..2469227 (-) 606 WP_244258101.1 DUF177 domain-containing protein -
  GLX30_RS10740 (GLX30_10790) - 2469394..2470479 (-) 1086 WP_159686590.1 cell division initiation protein -
  GLX30_RS10745 (GLX30_10795) coaD 2470574..2471056 (-) 483 WP_053556892.1 pantetheine-phosphate adenylyltransferase -
  GLX30_RS10750 (GLX30_10800) rsmD 2471083..2471667 (-) 585 WP_159686596.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GLX30_RS10755 (GLX30_10805) recG 2471722..2473908 (-) 2187 WP_159686599.1 ATP-dependent DNA helicase RecG Machinery gene
  GLX30_RS10760 (GLX30_10810) - 2474072..2475892 (+) 1821 WP_159686602.1 HSP90 family protein -
  GLX30_RS10765 (GLX30_10815) - 2475889..2478882 (+) 2994 WP_244258102.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 728 a.a.        Molecular weight: 78930.32 Da        Isoelectric Point: 6.0212

>NTDB_id=357522 GLX30_RS10755 WP_159686599.1 2471722..2473908(-) (recG) [Streptomyces sp. Tu 2975]
MDRVSAFDEPLKKTLGAATAKVMAEHLDLHTLGDLLHHYPRRYAERGELTSLAELPLDEHVTVVAQVADARIHTFNQGRG
RRLEVTITDGSGRLQLVFFGKGVHKPHKDLLPGTRAMFAGKVSVFNRKLQLSHPAYEPLSGGASAADAVDAFANQLIPIY
PACKQLESWKISKAIDAVLDRAAEAVDPLPSALREGRGMATLPDALRMVHRPRTKADIEAARERLKWDEAFVLQVALARR
RYADTQLPAVARRPVPGGLLDAFDAELPFTLTEGQQSVSKEIFDDLATDHPMHRLLQGEVGSGKTLVALRAMLAVVDAGG
QAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGAEQGTKVVLLTGSMGAAARRHALLDLVTGEAGIVIGTHALIEDKVQ
FHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAADKPH
FLARAWERVREEVEGGHQAYVVCPRIGDDEEQPKKKTAEDEAEKRPPLAVLAVADQLAKGPLSGLRVEVLHGRMPPDDKD
DVMRRFGAGDVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPEASPARQRLASV
ASTLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLTVIEDEEVIAAAREEAVAIVAADPDLERLPELRTALDALLDKE
REQYLEKG

Nucleotide


Download         Length: 2187 bp        

>NTDB_id=357522 GLX30_RS10755 WP_159686599.1 2471722..2473908(-) (recG) [Streptomyces sp. Tu 2975]
ATGGATCGCGTGTCCGCGTTCGACGAACCCCTCAAGAAGACGCTCGGCGCCGCCACCGCCAAGGTGATGGCCGAGCATCT
CGATCTGCACACCCTCGGTGACCTGCTGCACCACTATCCGCGGCGGTACGCGGAGCGCGGTGAGCTGACCTCCCTCGCCG
AGCTGCCGCTGGACGAGCACGTCACCGTGGTCGCCCAGGTCGCCGACGCGCGCATCCACACGTTCAACCAGGGCCGCGGC
AGGCGCCTCGAGGTGACCATCACGGACGGCAGCGGCCGGCTCCAGCTGGTCTTCTTCGGCAAGGGCGTCCACAAACCGCA
CAAGGACCTGCTGCCGGGCACCCGGGCGATGTTCGCGGGCAAGGTGTCCGTCTTCAACCGCAAGCTCCAGCTGTCCCACC
CCGCGTACGAACCGCTGAGCGGCGGCGCGAGCGCGGCCGACGCCGTGGACGCCTTCGCCAATCAGCTCATCCCGATCTAC
CCGGCCTGCAAGCAGCTGGAGTCGTGGAAGATCTCCAAGGCGATCGACGCGGTGCTGGACCGGGCCGCGGAGGCGGTGGA
CCCGCTGCCGTCCGCGCTGCGCGAGGGGCGGGGCATGGCGACCCTCCCCGACGCCCTGCGCATGGTCCACCGCCCGCGCA
CCAAGGCGGACATCGAAGCGGCCAGGGAGCGGCTGAAGTGGGACGAGGCGTTCGTCCTCCAGGTCGCGCTCGCCCGCAGG
CGGTACGCGGACACCCAACTCCCCGCGGTGGCCCGCCGCCCCGTCCCCGGCGGGCTCCTCGACGCGTTCGACGCCGAACT
GCCCTTCACCCTCACCGAGGGCCAGCAGTCGGTCAGCAAGGAGATCTTCGACGACCTCGCGACCGACCACCCCATGCACC
GCCTCCTTCAAGGAGAAGTGGGCTCCGGCAAGACGTTGGTCGCGCTACGGGCCATGCTCGCCGTCGTCGACGCGGGCGGC
CAGGCCGCGATGCTGGCCCCCACCGAGGTCCTCGCCCAGCAGCACCACCGCTCGATCACCGAGATGATGGGCGAGCTGGC
CGAGGGCGGCATGCTGGGAGGCGCGGAGCAGGGCACCAAGGTCGTGCTGCTGACCGGTTCCATGGGCGCCGCAGCCCGTC
GCCATGCCTTGCTCGACCTGGTGACCGGCGAGGCGGGGATCGTCATCGGCACCCACGCCCTGATCGAGGACAAGGTCCAG
TTCCACGACCTGGGCCTCGTCGTCGTCGACGAGCAGCACCGCTTCGGCGTGGAGCAGCGCGACGCCCTGCGCTCCAAGGG
GAAGCAGCCGCCGCACCTGCTGGTCATGACCGCCACCCCCATCCCGCGTACGGTCGCGATGACGGTCTTCGGCGACCTCG
AGACGTCCGTGCTCGACCAGTTGCCGGCCGGCCGCTCGCCGATCGCCAGCCATGTCGTCCCCGCCGCCGACAAGCCGCAC
TTCCTGGCGCGCGCCTGGGAGCGGGTCCGCGAAGAGGTCGAGGGCGGGCACCAGGCGTATGTGGTGTGCCCCCGCATCGG
CGACGACGAGGAGCAGCCGAAGAAGAAGACGGCGGAGGACGAGGCGGAGAAGCGCCCGCCGCTCGCCGTCCTCGCGGTCG
CCGACCAACTCGCCAAGGGGCCACTGAGCGGGCTGCGCGTCGAGGTCCTGCACGGGCGGATGCCGCCCGACGACAAGGAC
GACGTGATGCGCCGCTTCGGCGCCGGCGACGTCGACGTCCTGGTCGCCACCACCGTCATCGAGGTCGGCGTCAACGTCCC
GAACGCCACCGCCATGGTGATCATGGACGCGGACCGGTTCGGCGTCTCCCAGCTCCACCAGTTGCGCGGCCGGGTCGGCC
GCGGCTCCGCCCCGGGCCTGTGCCTGCTTGTCACCGAGATGCCGGAGGCGAGCCCCGCCCGTCAGCGTCTGGCCTCGGTC
GCCTCGACGCTCGACGGTTTCGAGCTCTCCCGGATCGACCTCGAGCAGCGCCGCGAGGGCGATGTGCTGGGCCAGGCCCA
GTCCGGGGTGCGCTCCTCCCTGCGGATGCTCACCGTCATCGAGGACGAGGAGGTCATCGCCGCGGCCCGTGAGGAGGCCG
TCGCGATCGTCGCGGCTGACCCCGACCTCGAGCGGCTGCCGGAGCTGCGCACCGCTCTGGACGCCCTGCTGGACAAGGAG
CGCGAGCAGTACCTCGAGAAGGGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(539-615)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-139)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(643-704)

DEAD/DEAH box helicase (DEAD)

(293-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.307

95.742

0.367