Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   GLX30_RS09865 Genome accession   NZ_CP047140
Coordinates   2257733..2258518 (+) Length   261 a.a.
NCBI ID   WP_159686164.1    Uniprot ID   -
Organism   Streptomyces sp. Tu 2975     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2252733..2263518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLX30_RS09850 (GLX30_09900) - 2252877..2253458 (+) 582 WP_279632631.1 TerD family protein -
  GLX30_RS09855 (GLX30_09905) - 2253598..2256489 (-) 2892 WP_159686158.1 vitamin B12-dependent ribonucleotide reductase -
  GLX30_RS09860 (GLX30_09910) nrdR 2256657..2257169 (-) 513 WP_159686161.1 transcriptional regulator NrdR -
  GLX30_RS09865 (GLX30_09915) dinR/lexA 2257733..2258518 (+) 786 WP_159686164.1 transcriptional repressor LexA Regulator
  GLX30_RS09870 (GLX30_09920) - 2258609..2260579 (-) 1971 WP_159686167.1 ATP-dependent DNA helicase -
  GLX30_RS09875 (GLX30_09925) - 2260632..2262430 (-) 1799 Protein_2015 IucA/IucC family siderophore biosynthesis protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28233.96 Da        Isoelectric Point: 8.0681

>NTDB_id=357516 GLX30_RS09865 WP_159686164.1 2257733..2258518(+) (dinR/lexA) [Streptomyces sp. Tu 2975]
MTTTADSATITAQDRSQSRFEPVQAMNDTGTTPEGPKPGRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKRENGHVWLLPHNAAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=357516 GLX30_RS09865 WP_159686164.1 2257733..2258518(+) (dinR/lexA) [Streptomyces sp. Tu 2975]
GTGACCACCACCGCCGACAGTGCCACCATCACTGCCCAGGACCGCTCACAGAGCCGATTCGAGCCGGTGCAAGCCATGAA
TGACACAGGCACGACCCCGGAGGGGCCCAAGCCCGGGCGCTCACTGCCCGGGCGACCTCCTGGCATCAGGGCGGACAGCT
CCGGCCTCACGGACAGGCAGCGGCGCGTCATCGAGGTGATCCGCGACTCCGTCCAGCGACGGGGCTACCCGCCGTCGATG
CGTGAGATCGGCCAGGCGGTCGGACTCTCGAGCACGTCTTCGGTGGCGCACCAGCTCATGGCCCTGGAGCGCAAGGGGTT
CCTGCGCAGGGACCCGCACCGCCCCCGGGCGTACGAGGTCCGCGGCTCCGACCAGCCCAGCACCCAGCCCACGGACACCA
CCGGCAAGCCCGCCGCCTCTTATGTCCCCCTTGTCGGCCGCATCGCGGCCGGTGGCCCCATCCTCGCCGAGGAATCCGTC
GAGGACGTCTTCCCCCTCCCCCGGCAGCTGGTCGGCGACGGTGAGCTCTTCGTACTGAAGGTCGTCGGAGACTCGATGAT
CGAAGCTGCGATCTGCGACGGGGACTGGGTGACCGTACGACGCCAGCCCGTGGCGGAGAACGGCGACATCGTGGCAGCCA
TGCTCGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGAACGGCCACGTCTGGCTCCTCCCCCACAACGCCGCTTAC
CAGCCCATCCCCGGCGACGAGGCGACCATCCTGGGCAAGGTGGTGGCGGTGCTGCGACGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.755

81.226

0.372