Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   DVT08_RS07195 Genome accession   NZ_CP047134
Coordinates   1587198..1589000 (+) Length   600 a.a.
NCBI ID   WP_128283909.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain IVIA5901     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1582198..1594000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVT08_RS07190 (DVT08_007320) - 1586476..1587018 (+) 543 WP_004083813.1 Dps family protein -
  DVT08_RS07195 (DVT08_007325) recQ 1587198..1589000 (+) 1803 WP_128283909.1 DNA helicase RecQ Machinery gene
  DVT08_RS07200 (DVT08_007330) - 1589123..1589602 (+) 480 WP_004083818.1 hypothetical protein -
  DVT08_RS07205 (DVT08_007335) - 1589803..1590768 (-) 966 WP_128283910.1 LLM class flavin-dependent oxidoreductase -
  DVT08_RS07210 (DVT08_007340) radA/sms 1590946..1592337 (+) 1392 WP_011097721.1 DNA repair protein RadA Machinery gene
  DVT08_RS07215 (DVT08_007345) trpA 1592578..1593384 (-) 807 WP_004083823.1 tryptophan synthase subunit alpha -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 67510.23 Da        Isoelectric Point: 8.4221

>NTDB_id=357475 DVT08_RS07195 WP_128283909.1 1587198..1589000(+) (recQ) [Xylella fastidiosa subsp. multiplex strain IVIA5901]
MSTSSATQTVLQRVFGYDTFRGPQQAIIEHVAAGHDALVLMPTGGGKSLCYQVPALLRKGIGVIISPLIALMQDQVETLR
QLGVRAAYLNSTLDATQAQRIEHALVTADLDLLYIAPERLLTAHFLSLLERSQIALFAIDEAHCVSQWGHDFRPEYRQLT
VLHERWPHVPRIALTATADPPTQREIAERLDLSDAHHFISSFDRPNIRYTVVQKNNMRRQLQEFLSRHRNTAGIVYAMSR
RKTEEIAAYLCTQGYNALPYHAGLPAETRAKHQRCFLREEGIVMCATIAFGMGINKPDVRFVAHIDLPKSLEGYYQETGR
AGRDGEAAEAWMCYSLGDVVLLKQMIEQSEASEARKCVERAKLDHLLGYCESMQCRRQLLLSSFGETYPNPCGNCDNCLT
PATAWDATVLSQKALSCVYRTGQRFGVGHLIDILRGSKSQRILQLGHDQLSTYGIGRDVDERSWRSVFRQLIATHLLEVD
NEGYGGLRLTPSSRPVLKGERQVMMRRDQFIRERDRTGQRHGLSVLPEDLGLFNALHRLRAQLAKEQNVPAFVIFHDSTL
RHIAEQRPTNLNALSKISGIGSNKLTRYGHQLIELVLAQG

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=357475 DVT08_RS07195 WP_128283909.1 1587198..1589000(+) (recQ) [Xylella fastidiosa subsp. multiplex strain IVIA5901]
ATGAGCACGTCTTCCGCCACCCAGACCGTTCTACAACGCGTCTTCGGCTACGACACCTTCCGTGGGCCCCAGCAAGCCAT
CATTGAGCATGTCGCTGCCGGCCACGATGCCTTGGTCCTGATGCCCACCGGGGGCGGCAAATCATTGTGCTACCAAGTGC
CTGCGCTGCTGCGCAAAGGCATCGGCGTAATCATCTCGCCGCTGATTGCACTGATGCAAGACCAAGTCGAGACCCTACGT
CAGCTTGGCGTACGCGCCGCCTATCTCAACTCGACCCTAGATGCAACGCAGGCACAACGGATCGAACACGCTCTAGTCAC
CGCAGATCTAGACCTGCTGTATATCGCTCCGGAACGGTTACTCACTGCACACTTCTTATCGCTGCTGGAACGTAGCCAGA
TCGCTTTGTTCGCCATCGACGAAGCTCACTGCGTCTCACAGTGGGGACATGATTTCCGTCCCGAATACCGCCAACTCACC
GTACTTCATGAACGCTGGCCACACGTGCCTCGGATTGCACTGACCGCAACCGCCGACCCACCCACACAACGCGAAATTGC
TGAGCGCCTTGACCTAAGCGATGCGCATCACTTCATCAGCTCATTCGACCGCCCCAACATCCGCTACACAGTCGTACAGA
AAAACAATATGCGGCGCCAACTACAAGAATTCCTCAGCCGCCATCGCAACACCGCAGGCATTGTCTACGCCATGTCACGG
CGCAAAACCGAAGAAATCGCCGCCTATCTGTGTACACAAGGCTACAACGCACTGCCTTACCATGCCGGCCTACCAGCCGA
AACACGGGCCAAGCACCAACGCTGCTTTCTGCGTGAAGAAGGGATTGTGATGTGTGCCACCATCGCCTTCGGCATGGGCA
TCAACAAACCTGATGTCCGCTTTGTCGCCCACATCGACCTCCCCAAATCACTGGAGGGTTATTACCAGGAAACCGGCCGC
GCCGGCCGCGATGGCGAAGCTGCAGAAGCATGGATGTGCTATAGCCTGGGAGACGTCGTACTGCTGAAACAAATGATCGA
ACAAAGCGAAGCCAGCGAAGCACGCAAGTGCGTAGAACGCGCCAAACTCGATCACCTGCTGGGCTACTGTGAATCAATGC
AATGCCGCCGCCAACTCTTACTGTCAAGCTTCGGGGAAACCTATCCAAACCCCTGTGGCAACTGTGACAACTGCCTGACC
CCAGCCACCGCCTGGGATGCCACCGTGCTCTCCCAAAAGGCGTTAAGTTGCGTCTACCGCACTGGCCAGCGCTTCGGGGT
TGGCCACCTAATCGACATACTACGTGGCAGTAAGAGCCAAAGAATATTGCAACTGGGTCATGACCAACTCAGCACCTACG
GCATCGGCCGTGACGTGGATGAACGCAGCTGGCGCAGTGTCTTTCGCCAACTCATCGCCACACACCTGTTGGAGGTCGAC
AACGAAGGCTACGGCGGCTTACGCCTGACCCCAAGCAGTCGTCCAGTCCTCAAAGGCGAACGCCAAGTCATGATGCGTCG
TGATCAGTTCATCCGTGAACGCGACCGTACCGGCCAACGTCACGGACTATCGGTCCTCCCGGAAGATCTGGGACTCTTCA
ATGCCCTGCATCGCTTACGTGCACAACTAGCCAAAGAACAAAACGTGCCGGCATTCGTGATCTTCCATGACAGCACCTTG
CGCCATATTGCCGAGCAACGCCCTACTAACCTCAATGCACTGAGCAAAATCAGCGGGATCGGCAGCAACAAACTGACACG
CTATGGCCATCAGTTAATTGAACTCGTACTTGCGCAAGGGTGA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(403-509)

Helicase conserved C-terminal domain (Helicase_C)

(220-324)

RecQ zinc-binding (RecQ_Zn_bind)

(337-399)

DEAD/DEAH box helicase (DEAD)

(24-179)

HRDC domain (HRDC)

(530-596)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

38.28

98.833

0.378