Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   LL3_RS18195 Genome accession   NC_017190
Coordinates   3579890..3581020 (-) Length   376 a.a.
NCBI ID   WP_014471144.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LL3     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3574890..3586020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL3_RS18160 (LL3_03808) - 3575029..3575670 (-) 642 WP_013353893.1 NAD(P)-dependent oxidoreductase -
  LL3_RS18165 (LL3_03809) - 3575735..3576139 (-) 405 WP_003151203.1 Rrf2 family transcriptional regulator -
  LL3_RS18170 (LL3_03810) ureC 3576281..3577990 (-) 1710 WP_013353894.1 urease subunit alpha -
  LL3_RS18175 (LL3_03811) ureB 3577987..3578361 (-) 375 WP_013353895.1 urease subunit beta -
  LL3_RS18180 (LL3_03812) ureA 3578358..3578675 (-) 318 WP_013353896.1 urease subunit gamma -
  LL3_RS18185 (LL3_03814) - 3579027..3579215 (-) 189 WP_014472339.1 CsbD family protein -
  LL3_RS18190 (LL3_03815) - 3579289..3579768 (-) 480 WP_014471143.1 hypothetical protein -
  LL3_RS18195 (LL3_03816) rapC 3579890..3581020 (-) 1131 WP_014471144.1 tetratricopeptide repeat protein Regulator
  LL3_RS18200 (LL3_03817) moaA 3581206..3582231 (-) 1026 WP_014471145.1 GTP 3',8-cyclase MoaA -
  LL3_RS18205 (LL3_03818) fdhD 3582249..3583037 (-) 789 WP_013353899.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  LL3_RS21490 (LL3_03819) - 3583132..3583296 (-) 165 WP_014471146.1 hypothetical protein -
  LL3_RS18210 (LL3_03820) - 3583382..3584062 (-) 681 WP_014471147.1 VWA domain-containing protein -
  LL3_RS18215 (LL3_03821) - 3584371..3585060 (-) 690 WP_013353901.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44906.03 Da        Isoelectric Point: 5.4460

>NTDB_id=35747 LL3_RS18195 WP_014471144.1 3579890..3581020(-) (rapC) [Bacillus amyloliquefaciens LL3]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPDFTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDQNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYVKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDEAALAYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNKKSLYVYIEDFALEAAIYTSAHKQYKEAAYFYEQAIRMRENIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=35747 LL3_RS18195 WP_014471144.1 3579890..3581020(-) (rapC) [Bacillus amyloliquefaciens LL3]
ATGACCGCATACGAGATTCCGTCATCTCAGGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGGATGGAGGAAGACCAGCTGCTGCTGCTGTATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGATTTTACCGAACAATCACAAATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCAGAATAACTATGTTGCAGCTATTTCTTTTTACAGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTTAAGATGTCTGAAGTTTTTTATGTCATGAAACAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACATATGTAAAACACGATTTTTACAGAGTGCGGAGAATTCAATGCCATTTCGTTATCTC
AGGAAACTATATCGACTGCAAAAACTACGACAAAGCGCTCGAGCATTTAGATGAAGCGCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGTCTGATTGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGCGATCTGGATGAAGCGGCC
CGTTACTTTAGAAAAGCGGTTCCCGTTTTTGAGGAGCACCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACACA
CACCCTTTTCAGGCTGCATGATGACGAAGCGGCCCTTGCCTATTATGAAAGAGGGGTTATGATCGCGAAAGAACGCGGCG
ACCGATTCAGTTTAGAGAAATATAAGTTTTTACAAGCGCTTTATCTGGAATCCCTCAATATGGACTTAATCCACGAAGTG
TTTGATTATATGAATAAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCATTTACACAAGCGCCCA
TAAGCAATATAAAGAAGCGGCGTATTTTTATGAACAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAATGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Tetratricopeptide repeat (TPR_12)

(192-251)

Anaphase-promoting complex subunit 5 (ANAPC5)

(314-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.431
  rapF Bacillus subtilis subsp. subtilis str. 168

40.267

99.734

0.402

Multiple sequence alignment