Detailed information NTG0357457

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: DVT08_RS03300
• Genome accession: NZ_CP047134
• Coordinates: 762181..763617 (-)
• Length: 478 a.a.
• NCBI ID: WP_031345817.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. multiplex strain IVIA5901
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 757181..768617

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DVT08_RS03285 (DVT08_003360)	-	759209..760403 (-)	1195	Protein_634	toprim domain-containing protein	-
DVT08_RS03290 (DVT08_003365)	-	760369..761367 (-)	999	WP_004085391.1	MBL fold metallo-hydrolase	-
DVT08_RS03295 (DVT08_003370)	-	761498..762184 (-)	687	WP_012337799.1	TIGR02453 family protein	-
DVT08_RS03300 (DVT08_003375)	sbcB	762181..763617 (-)	1437	WP_031345817.1	exodeoxyribonuclease I	Machinery gene
DVT08_RS11600 (DVT08_003380)	-	763805..764095 (+)	291	WP_027700686.1	hypothetical protein	-
DVT08_RS03305 (DVT08_003385)	-	764065..764919 (+)	855	WP_004085388.1	hypothetical protein	-
DVT08_RS03310 (DVT08_003390)	-	765842..767479 (+)	1638	WP_038259951.1	Na+/H+ antiporter	-
DVT08_RS03315 (DVT08_003395)	-	767854..768402 (+)	549	WP_004085386.1	hypothetical protein	-

Sequence

Protein

• Length: 478 a.a.
• Molecular weight: 54942.21 Da
• Isoelectric Point: 6.5860

>NTDB_id=357457 DVT08_RS03300 WP_031345817.1 762181..763617(-) (sbcB) [Xylella fastidiosa subsp. multiplex strain IVIA5901]
MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGITPQHAQREGISEVAAFA
HITMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYEREWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKL
EHLALANHAREGTAHEALSDVYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV
LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNKVPALIAWNHLRASDFTRLGL
NPAMLETKAAQLRACGPDLAEKVRHVFSHTYNTANDADASLYDGFLTEEDRRLLPQLRASPADTLATFEQRLRDPRLIEL
LFRYRARNFPETLSCDEQTRWDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSELSRTL

Nucleotide

• Length: 1437 bp

>NTDB_id=357457 DVT08_RS03300 WP_031345817.1 762181..763617(-) (sbcB) [Xylella fastidiosa subsp. multiplex strain IVIA5901]
ATGCCCCCCAGCTTTCTGTTCTACGACTTAGAAACTTTCGGTCAGGACCCCCGTCGTACCCGCATCGCACAGTTTGCCGC
AGTACGGACGGACACCCAATTAAACGTCATCGAAGAACCAATTAGTTTCCTCGTCAAACCCGCCGATGACCTGCTCCCCT
CACCCTACGCCACACTCATCACCGGAATTACCCCGCAACACGCACAACGTGAAGGCATCAGCGAAGTCGCAGCCTTCGCG
CACATTACAATGCAGATGACACAACCACACACCTGCTCCCTCGGCTACAACACGCTACGTTTCGACGACGAATTCATCCG
CTACGGGCTATTCCGTCACTTCTACGACCCATACGAACGCGAGTGGCGCAACGGCAATTCACGGTGGGACCTGCTGGACA
TGCTGCGACTCATGCACGCACTACGCCCAGAAGGCATCCACTGGCCAACACGTGAAGACGGTGCCCCCTCATTCAAACTC
GAACACCTAGCCCTTGCCAACCATGCACGCGAAGGCACAGCACACGAAGCATTATCAGATGTCTATGCCACCATCAGCAT
GGCGCGTAAATTCCGCGCCGCACAACCGCGCCTCTGGAATTACGCACTGCAACTGCGTGACAAACGCTTTTGCGCCAACC
TGCTCGACATCACCTCAATACAACCAGTACTGCATATCTCACAGCGCTATCCTGCCACACAACACTGCGCCGCCGCCGTG
CTGCCACTGACCACACACCCACACATCAACAACCGCATCATTGTTTTCGACTTGAACGGCGACATAGACACACTGCTGCG
CCTGTCTGCAGAAGACATCGCCGACCACCTGTACACCCCAGCCCTGGATTTACCCGAAGGCGAGCAACGTATCCCACTGA
AAGAAGTCCACCTAAACAAAGTACCGGCCCTGATCGCCTGGAACCACCTGCGTGCATCGGACTTCACACGCCTTGGCCTG
AACCCGGCCATGCTAGAAACCAAAGCGGCACAACTGCGCGCATGCGGACCGGATTTGGCCGAAAAAGTCCGCCACGTCTT
CAGCCATACCTACAACACCGCCAACGACGCTGATGCTTCACTGTACGACGGCTTTCTCACCGAAGAGGACCGCCGCCTCC
TGCCACAACTACGCGCCTCCCCTGCTGACACCTTGGCGACGTTCGAACAGCGCCTTCGCGATCCACGTCTCATCGAACTG
CTGTTCCGCTACCGCGCACGTAATTTTCCAGAAACCCTCTCTTGCGACGAACAGACACGCTGGGACACCTATCGGCGACG
CCGTCTGACCACCGACACCGGCCTATCAGAACTCACCTTCGACCAATACCACGCCCAAATTGCGGAATTACGGATAACGC
ACTCCCAAGATGCCACCAAACAGACCCTATTGGACCAACTCGCCGCCTGGGGCTCCGAACTATCCCGCACCCTATGA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (206-472)

• Exonuclease (RNase_T) (7-185)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	40.421	99.372	0.402