Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GRF62_RS17400 Genome accession   NZ_CP047127
Coordinates   3663206..3664633 (-) Length   475 a.a.
NCBI ID   WP_077775097.1    Uniprot ID   -
Organism   Escherichia coli K-12     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3658206..3669633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRF62_RS17370 (GRF62_17370) yeeZ 3658515..3659339 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  GRF62_RS17375 (GRF62_17375) yeeY 3659385..3660314 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  GRF62_RS17380 (GRF62_17380) yoeI 3660529..3660591 (+) 63 WP_010723108.1 membrane protein YoeI -
  GRF62_RS17385 (GRF62_17385) - 3660581..3661685 (+) 1105 Protein_3420 APC family permease -
  GRF62_RS17390 (GRF62_17390) tsuA 3661864..3662922 (+) 1059 WP_000492339.1 thiosulfate utilization transporter TsuA/YeeE -
  GRF62_RS17395 (GRF62_17395) tsuB 3662936..3663163 (+) 228 WP_046613325.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GRF62_RS17400 (GRF62_17400) sbcB 3663206..3664633 (-) 1428 WP_077775097.1 exodeoxyribonuclease I Machinery gene
  GRF62_RS17405 (GRF62_17405) dacD 3664842..3666008 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GRF62_RS17410 (GRF62_17410) sbmC 3666127..3666600 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  GRF62_RS17415 (GRF62_17415) yeeA 3666798..3667856 (+) 1059 WP_046613327.1 FUSC family protein -
  GRF62_RS17420 (GRF62_17420) tmaR 3668028..3668357 (+) 330 WP_000450409.1 DUF496 family protein -
  GRF62_RS17425 (GRF62_17425) - 3668458..3668640 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  GRF62_RS17430 (GRF62_17430) - 3668712..3668840 (+) 129 Protein_3429 transposase domain-containing protein -
  GRF62_RS22705 - 3669129..3669209 (-) 81 Protein_3430 hypothetical protein -
  GRF62_RS17435 (GRF62_17435) yeeW 3669255..3669449 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54490.78 Da        Isoelectric Point: 5.4700

>NTDB_id=357432 GRF62_RS17400 WP_077775097.1 3663206..3664633(-) (sbcB) [Escherichia coli K-12]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLSALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=357432 GRF62_RS17400 WP_077775097.1 3663206..3664633(-) (sbcB) [Escherichia coli K-12]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTATCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585