Detailed information NTG0357419

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GRF62_RS13755
• Genome accession: NZ_CP047127
• Coordinates: 2885837..2886829 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081586.1
• Uniprot ID: Q540P1
• Organism: Escherichia coli K-12
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2880837..2891829

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GRF62_RS13725 (GRF62_13725)	ispD	2880898..2881608 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GRF62_RS13730 (GRF62_13730)	ispF	2881608..2882087 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GRF62_RS13735 (GRF62_13735)	truD	2882084..2883133 (+)	1050	WP_000568970.1	tRNA pseudouridine(13) synthase TruD	-
GRF62_RS13740 (GRF62_13740)	surE	2883114..2883875 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GRF62_RS13745 (GRF62_13745)	pcm	2883869..2884495 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GRF62_RS13750 (GRF62_13750)	nlpD	2884680..2885774 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
GRF62_RS13755 (GRF62_13755)	rpoS	2885837..2886829 (+)	993	WP_000081586.1	RNA polymerase sigma factor RpoS	Regulator
GRF62_RS13760 (GRF62_13760)	ygbN	2886923..2888287 (-)	1365	WP_000104441.1	GntP family transporter	-
GRF62_RS13765 (GRF62_13765)	ygbM	2888376..2889152 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
GRF62_RS13770 (GRF62_13770)	ygbL	2889157..2889795 (-)	639	WP_001278994.1	aldolase	-
GRF62_RS13775 (GRF62_13775)	otnK	2889887..2891053 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37956.89 Da
• Isoelectric Point: 4.5886

>NTDB_id=357419 GRF62_RS13755 WP_000081586.1 2885837..2886829(+) (rpoS) [Escherichia coli K-12]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVELEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=357419 GRF62_RS13755 WP_000081586.1 2885837..2886829(+) (rpoS) [Escherichia coli K-12]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACTGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: Q540P1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715