Detailed information NTG0357410

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: Psal139_RS19280
• Genome accession: NZ_CP039176
• Coordinates: 2940391..2941344 (+)
• Length: 317 a.a.
• NCBI ID: WP_069971666.1
• Uniprot ID: -
• Organism: Piscirickettsia salmonis strain Psal-139
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2935391..2946344

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Psal139_RS14835 (Psal139_02950)	-	2935682..2936038 (+)	357	WP_048875886.1	class I SAM-dependent methyltransferase	-
Psal139_RS14840 (Psal139_02951)	-	2936035..2937438 (-)	1404	WP_053856766.1	IS4 family transposase	-
Psal139_RS14845 (Psal139_02952)	-	2937558..2938118 (-)	561	WP_027243085.1	YbfB/YjiJ family MFS transporter	-
Psal139_RS14850 (Psal139_02953)	-	2938276..2938842 (-)	567	WP_017376236.1	hypothetical protein	-
Psal139_RS19680 (Psal139_02954)	-	2939045..2939176 (+)	132	WP_282434975.1	hypothetical protein	-
Psal139_RS19275 (Psal139_02955)	-	2939156..2940322 (-)	1167	WP_230384247.1	hypothetical protein	-
Psal139_RS19280 (Psal139_02956)	pilA	2940391..2941344 (+)	954	WP_069971666.1	signal recognition particle-docking protein FtsY	Machinery gene
Psal139_RS14865 (Psal139_02957)	-	2941608..2942303 (-)	696	WP_027243087.1	hypothetical protein	-
Psal139_RS19285	-	2942344..2942478 (-)	135	Protein_2961	IS3 family transposase	-
Psal139_RS19290 (Psal139_02958)	-	2942761..2943588 (-)	828	WP_335645905.1	IS3 family transposase	-
Psal139_RS19295 (Psal139_02959)	-	2943501..2943788 (-)	288	WP_017376231.1	IS3 family transposase	-
Psal139_RS14880 (Psal139_02960)	-	2943854..2944021 (+)	168	WP_017376230.1	hypothetical protein	-
Psal139_RS14885 (Psal139_02961)	-	2944129..2945238 (+)	1110	WP_017376229.1	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 34301.26 Da
• Isoelectric Point: 6.3084

>NTDB_id=357410 Psal139_RS19280 WP_069971666.1 2940391..2941344(+) (pilA) [Piscirickettsia salmonis strain Psal-139]
MEKSNTNSNSEKKQGLFARLKSGLSKTRENLASGITTLLIGEKKIDDELLEDLETQLLMADVGIDATTHIITDLTKRLDR
NELTDTQKAMEALKENLSSMLTPCSVPLEIPKSPDPFVILVVGVNGAGKTTTIGKLAKHYQNQGKSVMLAAGDTFRAAAV
EQLQVWGERNDIPVVAQHTGADSASVIFDAYNSAKAHGCDILIADTAGRLHTQSNLMEELKKVKRVLGKVDNTAPHEVLL
VLDSGTGQNAINQAEQFHHAVNVSGIVMTKLDGTAKGGVIFAIAKKMQLPIRYIGVGEKIDDLRPFKSDEFIEALFG

Nucleotide

• Length: 954 bp

>NTDB_id=357410 Psal139_RS19280 WP_069971666.1 2940391..2941344(+) (pilA) [Piscirickettsia salmonis strain Psal-139]
ATTGAAAAAAGCAACACCAATAGTAATAGCGAGAAAAAGCAAGGCTTATTCGCCCGCTTAAAATCTGGTCTCAGTAAGAC
CCGTGAAAATCTGGCCTCAGGTATTACTACACTTTTAATCGGTGAGAAAAAAATCGATGATGAGCTGCTGGAAGATTTAG
AAACTCAGCTACTCATGGCAGACGTCGGCATTGATGCAACGACCCATATCATTACTGACCTAACCAAGCGTCTTGATCGC
AACGAACTTACAGATACCCAAAAAGCGATGGAAGCGCTCAAAGAAAACCTATCCAGCATGCTTACGCCTTGTAGTGTTCC
TCTAGAGATTCCCAAATCACCAGACCCCTTTGTTATTTTAGTCGTCGGCGTCAATGGTGCAGGTAAAACCACAACCATAG
GCAAACTTGCGAAACACTACCAGAACCAAGGCAAAAGCGTCATGCTCGCTGCAGGTGATACCTTCCGCGCTGCCGCGGTT
GAACAATTGCAAGTCTGGGGAGAGCGTAACGATATTCCGGTAGTTGCCCAGCATACCGGTGCTGATAGCGCATCAGTCAT
TTTCGATGCGTATAACTCAGCCAAAGCACATGGTTGTGATATTTTAATTGCCGATACCGCAGGCCGACTGCATACACAAA
GCAACTTAATGGAAGAGCTTAAAAAAGTAAAACGCGTGCTTGGCAAAGTCGACAATACAGCACCGCATGAAGTTTTATTA
GTTCTAGACTCAGGCACCGGGCAAAACGCTATTAACCAAGCTGAGCAGTTTCATCACGCTGTCAATGTATCAGGCATTGT
CATGACTAAACTCGATGGTACTGCTAAAGGTGGGGTCATTTTTGCCATTGCTAAAAAAATGCAACTACCGATCCGTTATA
TCGGTGTCGGTGAAAAAATCGATGATCTACGCCCTTTTAAATCAGATGAATTTATTGAGGCTTTGTTTGGCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (33-97)

• SRP54-type protein, GTPase domain (SRP54) (116-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.074	97.476	0.517