Detailed information NTG0035726

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: LL3_RS15190
• Genome accession: NC_017190
• Coordinates: 2986843..2987973 (-)
• Length: 376 a.a.
• NCBI ID: WP_013353308.1
• Uniprot ID: A0A9P1JJI8
• Organism: Bacillus amyloliquefaciens LL3
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2981843..2992973

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL3_RS15160 (LL3_03172)	-	2982058..2982726 (+)	669	WP_014472181.1	TrkA family potassium uptake protein	-
LL3_RS15165 (LL3_03173)	-	2982750..2983595 (-)	846	WP_013353303.1	glucosaminidase domain-containing protein	-
LL3_RS15170 (LL3_03175)	hmpA	2983735..2984910 (-)	1176	WP_013353304.1	NO-inducible flavohemoprotein	-
LL3_RS15175 (LL3_03176)	-	2985127..2985767 (+)	641	Protein_3040	cupin domain-containing protein	-
LL3_RS15180 (LL3_03177)	-	2985827..2986150 (-)	324	WP_013353306.1	hypothetical protein	-
LL3_RS15190 (LL3_03180)	rapC	2986843..2987973 (-)	1131	WP_013353308.1	tetratricopeptide repeat protein	Regulator
LL3_RS15195	-	2988361..2988564 (+)	204	WP_014470862.1	hypothetical protein	-
LL3_RS15205 (LL3_03181)	-	2988883..2989713 (-)	831	WP_038463014.1	undecaprenyl-diphosphate phosphatase	-
LL3_RS15210 (LL3_03182)	-	2989805..2990965 (-)	1161	WP_013353344.1	AI-2E family transporter	-
LL3_RS15215 (LL3_03184)	-	2991144..2992130 (+)	987	WP_013353345.1	Gfo/Idh/MocA family protein	-
LL3_RS15220 (LL3_03185)	-	2992162..2992686 (-)	525	WP_013353346.1	type 1 glutamine amidotransferase domain-containing protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44372.86 Da
• Isoelectric Point: 6.5099

>NTDB_id=35726 LL3_RS15190 WP_013353308.1 2986843..2987973(-) (rapC) [Bacillus amyloliquefaciens LL3]
MSPVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYSLMKFRHQLMLDYLEPVTVRVRPTIDE
LLEKIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLIHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYVDFKRYEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYSKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIYQGDKLFESLQKYLEALYINAIDQMGIKKT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYIYHQKMIQTQKQIQRGECLYEF

Nucleotide

• Length: 1131 bp

>NTDB_id=35726 LL3_RS15190 WP_013353308.1 2986843..2987973(-) (rapC) [Bacillus amyloliquefaciens LL3]
GTGAGTCCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAGATAAACGAGATGGAAGAAGACGAGTATTTACTAATATATTATT
CTCTCATGAAATTCCGCCATCAACTCATGCTTGATTATTTAGAGCCGGTAACTGTCAGAGTCCGACCGACAATCGACGAG
TTGCTGGAAAAAATCGAAGCATCAAATAAAGGCATTTCCGGCCTGCTGTGCTATTATTCTTTATTTTTTCGCGGCATGTA
TGAATTTGATCAGAAGCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCATTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCCATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAAGTCCGGAAAATTCAATGTCTGTTCGTCATATCTGG
GAATTATGTTGACTTTAAACGTTATGAAAAAAGTTTGCCGCATTTAGAAAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACTTAGAAGAATACAGTAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATTTCTGAAAAGTATAAATTGGGCAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGCAAAAAAGGACTTTCATCAGCTATATATCAAGGGG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATACATTAACGCAATAGACCAAATGGGAATCAAAAAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAGTC
AAAGCAATATGACAAATCATATATTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (193-252)

3D structure

• AlphaFold DB: A0A9P1JJI8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.591	100	0.449
rapF	Bacillus subtilis subsp. subtilis str. 168	40.633	100	0.41