Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   E5Y90_RS02265 Genome accession   NZ_CP039143
Coordinates   494875..495732 (+) Length   285 a.a.
NCBI ID   WP_171478839.1    Uniprot ID   -
Organism   Acinetobacter sp. 10FS3-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 489875..500732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Y90_RS02240 (E5Y90_02280) wrbA 490688..491284 (+) 597 WP_174659287.1 NAD(P)H:quinone oxidoreductase -
  E5Y90_RS02245 (E5Y90_02285) - 491331..491702 (-) 372 WP_174659288.1 hypothetical protein -
  E5Y90_RS02250 (E5Y90_02290) - 492390..492965 (-) 576 WP_151204924.1 xanthine phosphoribosyltransferase -
  E5Y90_RS02255 (E5Y90_02295) - 493056..493766 (-) 711 WP_174659289.1 DUF3108 domain-containing protein -
  E5Y90_RS02260 (E5Y90_02300) - 493925..494611 (-) 687 WP_174659290.1 hypothetical protein -
  E5Y90_RS02265 (E5Y90_02305) tonB2 494875..495732 (+) 858 WP_171478839.1 energy transducer TonB Machinery gene
  E5Y90_RS02270 (E5Y90_02315) - 495927..496325 (-) 399 WP_174659291.1 hypothetical protein -
  E5Y90_RS02275 (E5Y90_02320) ybeY 496468..496950 (-) 483 WP_174659292.1 rRNA maturation RNase YbeY -
  E5Y90_RS02280 (E5Y90_02325) - 496969..498051 (-) 1083 WP_174659293.1 PhoH family protein -
  E5Y90_RS02285 (E5Y90_02330) miaB 498089..499546 (-) 1458 WP_174659294.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32626.96 Da        Isoelectric Point: 7.4019

>NTDB_id=357201 E5Y90_RS02265 WP_171478839.1 494875..495732(+) (tonB2) [Acinetobacter sp. 10FS3-1]
MPLVKVWWKDPVFSSAVLAAVVLHLVVLTLEFAMPQDEKTSTKEIAVSLRQSENKVEQADFLGQTDQQGSGKFREVHRMS
SDQPSPFAEQKAGEEQQDSPDMLQQQRELSFEEKVLMTTLSWQKQAEENQRKKMQEQLNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDVSAAYLEKFRQKVEFYGNRYYPDAARQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHHLL
DEAAKASVRKAAPFGAFDSKMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=357201 E5Y90_RS02265 WP_171478839.1 494875..495732(+) (tonB2) [Acinetobacter sp. 10FS3-1]
ATGCCTCTGGTTAAAGTCTGGTGGAAAGATCCAGTTTTTAGCAGTGCCGTGCTGGCAGCAGTGGTCTTGCATCTGGTGGT
GCTGACTCTGGAATTTGCAATGCCGCAGGATGAGAAAACCTCGACCAAGGAAATTGCCGTGAGCCTGCGTCAAAGTGAAA
ATAAAGTTGAGCAGGCAGATTTTCTGGGGCAGACCGATCAGCAGGGTTCAGGCAAGTTTCGCGAAGTACATCGTATGTCG
AGCGATCAGCCATCGCCTTTTGCGGAACAAAAGGCCGGGGAAGAGCAGCAGGACAGCCCGGATATGCTGCAACAGCAGCG
TGAGCTGAGCTTTGAAGAAAAAGTCCTGATGACGACTTTAAGCTGGCAAAAACAGGCGGAAGAAAATCAGCGGAAGAAAA
TGCAGGAACAGCTCAATAGCCAGTTCCAAGCCAAAGCCGCCATGGTCGCAAGTCTGGAAGCGCAATATTTACAGCGACAG
CAAAACTTTAGTCGTCAGCAAAAGATTAAAACAGTGGATGGTATTCAGGCCAAGCAGGATGTGTCAGCGGCTTATTTGGA
AAAATTCCGTCAAAAAGTGGAGTTTTATGGTAACCGCTATTATCCGGATGCCGCCCGACAGCAAAATCTGGCTGGTGAAG
TGCGCCTGATGGTCATTTTAAACCAGAACGGTGGAATTCGGGCGATTCGCCTGATTGACAGTTCGGGACATCATTTGCTG
GATGAAGCAGCCAAAGCATCAGTGCGTAAGGCTGCACCTTTTGGGGCTTTTGACAGCAAGATGAAAGATATTTCTGAACT
GCGTATTATCCGAACCTGGCGCTTTGATCCGGCAGAGGCAGAATTTGAAGTACGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

72.043

97.895

0.705

Multiple sequence alignment