Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   E5Y90_RS01115 Genome accession   NZ_CP039143
Coordinates   236381..236707 (+) Length   108 a.a.
NCBI ID   WP_171478826.1    Uniprot ID   -
Organism   Acinetobacter sp. 10FS3-1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 231381..241707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Y90_RS01090 (E5Y90_01125) hemC 232056..232979 (+) 924 WP_151207596.1 hydroxymethylbilane synthase -
  E5Y90_RS01095 (E5Y90_01130) - 232979..233761 (+) 783 WP_174659164.1 uroporphyrinogen-III synthase -
  E5Y90_RS01100 (E5Y90_01135) - 233758..234594 (+) 837 WP_174659165.1 hypothetical protein -
  E5Y90_RS01105 (E5Y90_01140) - 234601..235794 (+) 1194 WP_174659166.1 heme biosynthesis protein HemY -
  E5Y90_RS01110 (E5Y90_01145) - 235803..236231 (+) 429 WP_174659167.1 acyl-CoA thioesterase -
  E5Y90_RS01115 (E5Y90_01150) hns 236381..236707 (+) 327 WP_171478826.1 H-NS family nucleoid-associated regulatory protein Regulator
  E5Y90_RS01120 (E5Y90_01155) gspN 236888..237631 (+) 744 WP_174659168.1 type II secretion system protein N -
  E5Y90_RS01125 (E5Y90_01160) - 237631..238491 (+) 861 WP_174659169.1 type II secretion system protein N -
  E5Y90_RS01130 (E5Y90_01165) gspD 238533..240788 (+) 2256 WP_174659170.1 type II secretion system secretin GspD -
  E5Y90_RS01135 (E5Y90_01170) - 240851..241510 (+) 660 WP_174659171.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12348.17 Da        Isoelectric Point: 9.5134

>NTDB_id=357197 E5Y90_RS01115 WP_171478826.1 236381..236707(+) (hns) [Acinetobacter sp. 10FS3-1]
MMPDITNLSVEQLKRLQAEAEALIASKKDQEIEEAYRQVLEIAEKVGLSIEQLIEFGASKRKKTSRKSVEPRYRSKSNTA
DTWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=357197 E5Y90_RS01115 WP_171478826.1 236381..236707(+) (hns) [Acinetobacter sp. 10FS3-1]
ATAATGCCGGATATCACAAATCTATCTGTTGAACAGTTAAAACGCCTGCAAGCTGAAGCTGAAGCCCTGATTGCCTCAAA
AAAAGATCAAGAAATTGAAGAAGCTTATCGTCAAGTTTTAGAGATTGCGGAAAAAGTGGGATTAAGTATTGAACAGCTGA
TCGAGTTTGGCGCGTCGAAACGTAAAAAAACCTCACGTAAATCTGTAGAGCCACGTTATCGCAGTAAATCGAATACTGCA
GATACCTGGACCGGTCGTGGTAAACAGCCACGTTGGCTGGTTGCAGAATTGGAAAAAGGTGCAAAGCTGGAAGATTTTTT
AATTTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

79.63

100

0.796

Multiple sequence alignment