Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E5221_RS24130 Genome accession   NZ_CP039127
Coordinates   5205536..5206906 (-) Length   456 a.a.
NCBI ID   WP_003251626.1    Uniprot ID   I7AVL1
Organism   Pseudomonas sp. A2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5200536..5211906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5221_RS24110 (E5221_24985) - 5200760..5200957 (-) 198 WP_013974210.1 YbdD/YjiX family protein -
  E5221_RS24115 (E5221_24990) - 5200971..5203037 (-) 2067 WP_024087740.1 carbon starvation CstA family protein -
  E5221_RS24120 (E5221_24995) - 5203216..5203578 (+) 363 WP_013974212.1 PilZ domain-containing protein -
  E5221_RS24125 (E5221_25000) - 5203842..5205359 (+) 1518 WP_013974213.1 nucleobase:cation symporter-2 family protein -
  E5221_RS24130 (E5221_25005) radA 5205536..5206906 (-) 1371 WP_003251626.1 DNA repair protein RadA Machinery gene
  E5221_RS24135 (E5221_25010) mscL 5207083..5207502 (+) 420 WP_003258332.1 large-conductance mechanosensitive channel protein MscL -
  E5221_RS24140 (E5221_25015) - 5207537..5208313 (-) 777 WP_023661108.1 ferredoxin--NADP reductase -
  E5221_RS24145 (E5221_25020) - 5208525..5209232 (+) 708 WP_039613046.1 autoinducer binding domain-containing protein -
  E5221_RS24150 (E5221_25025) - 5209329..5210453 (+) 1125 WP_247846557.1 methyltransferase -
  E5221_RS24155 (E5221_25030) - 5210570..5210725 (-) 156 WP_013974218.1 DUF2474 domain-containing protein -
  E5221_RS24160 (E5221_25035) cydB 5210735..5211742 (-) 1008 WP_013974219.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48741.18 Da        Isoelectric Point: 6.8985

>NTDB_id=357189 E5221_RS24130 WP_003251626.1 5205536..5206906(-) (radA) [Pseudomonas sp. A2]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETII
ATARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=357189 E5221_RS24130 WP_003251626.1 5205536..5206906(-) (radA) [Pseudomonas sp. A2]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGTGCGACCTTCCCCAAATGGGCCGGCCAGTGTGGCGAATG
CGGGGCCTGGAACACCCTGGTCGAGACCATGATCGAAAGCGGTGGTGCCGCTGCGCCCAGTAGCGGCCGTGCTGGCTGGA
CCGGGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAGATCCCGCGCTTCACCACCAGCAGCACCGAA
CTGGACCGCGTGCTGGGCGGTGGCCTGGTGGATGGCTCGGTGGTGTTGATCGGTGGTGACCCCGGCATCGGCAAATCGAC
CATCCTGCTGCAGACCTTGTGCAACATTGCCGTGGGCATGCCGGCGCTGTATGTCACCGGCGAGGAGTCGCAGCAGCAGG
TGGCCATGCGCTCCCGGCGCCTGGGCCTGCCCCAGGATCAGCTCAAGGTGATGACCGAAACCTGTATCGAGACCATCATC
GCCACGGCTCGCGTCGAAAAACCGCGGGTCATGGTGATCGACTCGATCCAGACCATTTTCACCGAGCAGCTGCAATCGGC
ACCCGGCGGAGTGGCCCAGGTGCGCGAAAGTACGGCATTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCC
TGGTCGGCCACGTGACCAAGGAAGGCTCGCTGGCCGGCCCGCGGGTACTCGAGCACATGGTGGACACCGTGCTGTATTTC
GAAGGCGAGTCCGATGGCCGCCTGCGCCTGCTGCGGGCAGTCAAGAACCGCTTTGGCGCGGTCAACGAGCTGGGTGTGTT
CGGCATGACCGACCGGGGCCTGAAGGAAGTGTCCAACCCCTCGGCGATCTTCCTCAACCGCACCCAGGAGGAAGTACCGG
GCAGCGTGGTGATGGCCACCTGGGAAGGCACCCGGCCAATGCTGGTGGAGGTGCAGGCACTGGTCGACGACAGCCACCTG
GCCAACCCGCGCCGCGTGACCTTGGGCCTTGACCAGAACCGCCTGGCCATGTTGCTGGCGGTGCTGCACCGCCACGGCGG
TATTCCCACCCATGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTGAAGGTGCTGGAAACCGCTTCTGACCTGGCGT
TGCTGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCCCTGGCGCATGGCCTGCTGGTGTTTGGCGAGATCGGCCTGTCT
GGCGAGGTACGGCCGGTGCCCAGTGGTCAGGAGCGTTTGAAGGAGGCCGCCAAGCATGGTTTCAAGCGGGCCATCGTGCC
CAAGGGCAATGCGCCGAAAGAGGCTCCGGCCGGGTTGCAGGTGATTGCCGTTACCCGGCTGGAGCAGGCTCTGGATGCGT
TGTTCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I7AVL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus mitis NCTC 12261

45.87

100

0.463
  radA Streptococcus mitis SK321

46.053

100

0.461

Multiple sequence alignment