Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GQX72_RS00660 Genome accession   NZ_CP047059
Coordinates   129543..130718 (+) Length   391 a.a.
NCBI ID   WP_000136719.1    Uniprot ID   Q9KVJ6
Organism   Vibrio cholerae isolate CTMA_1441     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 124543..135718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQX72_RS00625 (GQX72_00625) - 125379..125849 (-) 471 WP_000224703.1 Dps family protein -
  GQX72_RS00630 (GQX72_00630) - 126019..126348 (-) 330 WP_001117042.1 DUF2500 domain-containing protein -
  GQX72_RS00635 (GQX72_00635) - 126553..126921 (+) 369 WP_001289435.1 DUF4145 domain-containing protein -
  GQX72_RS00640 (GQX72_00645) - 127424..127682 (+) 259 Protein_116 hypothetical protein -
  GQX72_RS00645 (GQX72_00650) - 127799..128428 (+) 630 WP_000062274.1 lysoplasmalogenase -
  GQX72_RS00650 (GQX72_00655) - 128477..128743 (-) 267 WP_000645840.1 DUF1145 domain-containing protein -
  GQX72_RS00655 (GQX72_00660) rsmD 128740..129339 (-) 600 WP_001189766.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GQX72_RS00660 (GQX72_00665) pilA 129543..130718 (+) 1176 WP_000136719.1 signal recognition particle-docking protein FtsY Machinery gene
  GQX72_RS00665 (GQX72_00670) ftsE 130767..131441 (+) 675 WP_000617864.1 cell division ATP-binding protein FtsE -
  GQX72_RS00670 (GQX72_00675) ftsX 131431..132423 (+) 993 WP_000279340.1 permease-like cell division protein FtsX -
  GQX72_RS00675 (GQX72_00680) rpoH 132593..133453 (+) 861 WP_000184359.1 RNA polymerase sigma factor RpoH -
  GQX72_RS00680 (GQX72_00685) sthA 133655..135055 (-) 1401 WP_000529898.1 Si-specific NAD(P)(+) transhydrogenase -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 42804.47 Da        Isoelectric Point: 4.4722

>NTDB_id=357181 GQX72_RS00660 WP_000136719.1 129543..130718(+) (pilA) [Vibrio cholerae isolate CTMA_1441]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQTETALTETETETETETETETETETATVEPARIVE
QEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASRQQLRDGEAL
YGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGER
NQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQN
AISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=357181 GQX72_RS00660 WP_000136719.1 129543..130718(+) (pilA) [Vibrio cholerae isolate CTMA_1441]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTGGCGATTCAAACGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGCCACGGTTGAACCTGCACGTATTGTTGAA
CAAGAGAAACCGACCGAAAGTTTCTTTGCGCGCTTAAAGCGCAGTTTGAGCCGCACCAAAGCGAATATTGGCGCTGGCTT
CTTTGGCCTGTTTAAAGGCAAAAAGATTGATGATGACCTGTTCGAAGAGCTCGAAGAACAACTGCTGATTGCCGATGTCG
GCATGGATACGACCAGCAAAATCATCGCTAATTTGACCGCCAGAGCTTCTCGCCAGCAACTGCGTGATGGGGAAGCGCTG
TACGGTCTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGCAGCCATTGGTGATCGACACTGAGAAAAAACC
TTACGTGATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACTACCACGATCGGTAAACTGGCTAAACAGTTCCAAGCGC
AAGGCAAGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAAGTGTGGGGAGAGCGC
AATCAAGTGCCTGTCATCGCTCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGCGATTGAAGCGGCGAAAGC
GCGCGGGATTGACGTGGTGATTGCGGATACCGCAGGCCGTCTGCAAAACAAAAGTAACCTGATGGAAGAGCTGCGCAAGA
TTGTGCGCGTGATGAAGAAGATTGATGACAGTGCGCCACATGAAATCATGTTGACGCTGGATGCGGGTACCGGACAAAAC
GCGATCAGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGCATTACCTTAACTAAGCTTGATGGCACCGCTAA
AGGTGGCGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCGAGAAAATTGACGACT
TACGTCCATTTGCAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(188-387)

SRP54-type protein, helical bundle domain (SRP54_N)

(107-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KVJ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

54

76.726

0.414