Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GQ584_RS11505 Genome accession   NZ_CP047057
Coordinates   2350046..2351473 (+) Length   475 a.a.
NCBI ID   WP_000980557.1    Uniprot ID   -
Organism   Escherichia coli NC101     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2345046..2356473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQ584_RS11475 (GQ584_11365) pduU 2345425..2345775 (+) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -
  GQ584_RS11480 (GQ584_11370) - 2345780..2346223 (+) 444 WP_001189435.1 EutP/PduV family microcompartment system protein -
  GQ584_RS11485 (GQ584_11375) tmaR 2346323..2346652 (-) 330 WP_000450409.1 DUF496 family protein -
  GQ584_RS11490 (GQ584_11380) yeeA 2346823..2347881 (-) 1059 WP_001200890.1 FUSC family protein -
  GQ584_RS11495 (GQ584_11385) sbmC 2348079..2348552 (-) 474 WP_001105406.1 DNA gyrase inhibitor SbmC -
  GQ584_RS11500 (GQ584_11390) dacD 2348671..2349837 (-) 1167 WP_001350336.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GQ584_RS11505 (GQ584_11395) sbcB 2350046..2351473 (+) 1428 WP_000980557.1 exodeoxyribonuclease I Machinery gene
  GQ584_RS11510 (GQ584_11400) plaP 2351547..2352905 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  GQ584_RS11515 (GQ584_11405) yoeI 2352895..2352957 (-) 63 WP_010723108.1 membrane protein YoeI -
  GQ584_RS11520 (GQ584_11410) yeeY 2353172..2354101 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  GQ584_RS11525 (GQ584_11415) yeeZ 2354147..2354971 (-) 825 WP_000754741.1 SDR family oxidoreductase -
  GQ584_RS11530 (GQ584_11420) yoeB 2355054..2355308 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  GQ584_RS11535 (GQ584_11425) yefM 2355305..2355556 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  GQ584_RS11540 (GQ584_11430) hisL 2355839..2355889 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.73 Da        Isoelectric Point: 5.4700

>NTDB_id=357119 GQ584_RS11505 WP_000980557.1 2350046..2351473(+) (sbcB) [Escherichia coli NC101]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=357119 GQ584_RS11505 WP_000980557.1 2350046..2351473(+) (sbcB) [Escherichia coli NC101]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583