Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GQ584_RS03210 Genome accession   NZ_CP047057
Coordinates   669662..670267 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli NC101     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 664662..675267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQ584_RS03180 (GQ584_03130) rsmS 665367..665528 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  GQ584_RS03185 (GQ584_03135) priC 665542..666069 (-) 528 WP_000844854.1 primosomal replication protein N'' -
  GQ584_RS03190 (GQ584_03140) ybaN 666139..666516 (+) 378 WP_001188900.1 DUF454 family protein -
  GQ584_RS03195 (GQ584_03145) apt 666669..667220 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  GQ584_RS03200 (GQ584_03150) dnaX 667349..669280 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  GQ584_RS03205 (GQ584_03155) ybaB 669333..669662 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  GQ584_RS03210 (GQ584_03160) recR 669662..670267 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  GQ584_RS03215 (GQ584_03165) htpG 670377..672251 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  GQ584_RS03220 (GQ584_03170) adk 672432..673076 (+) 645 WP_001220233.1 adenylate kinase -
  GQ584_RS03225 (GQ584_03175) hemH 673208..674170 (+) 963 WP_001250114.1 ferrochelatase -
  GQ584_RS03230 (GQ584_03180) aes 674145..675113 (-) 969 WP_000801820.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=357101 GQ584_RS03210 WP_001195025.1 669662..670267(+) (recR) [Escherichia coli NC101]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=357101 GQ584_RS03210 WP_001195025.1 669662..670267(+) (recR) [Escherichia coli NC101]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment