Detailed information NTG0357093

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: Psal135_RS14840
• Genome accession: NZ_CP039112
• Coordinates: 2940720..2941673 (+)
• Length: 317 a.a.
• NCBI ID: WP_069971666.1
• Uniprot ID: -
• Organism: Piscirickettsia salmonis strain Psal-135
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2935720..2946673

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Psal135_RS14815 (Psal135_02953)	-	2935956..2936312 (+)	357	WP_048875886.1	class I SAM-dependent methyltransferase	-
Psal135_RS14820 (Psal135_02954)	-	2936309..2937712 (-)	1404	WP_053856766.1	IS4 family transposase	-
Psal135_RS14825 (Psal135_02955)	-	2937832..2938392 (-)	561	WP_027243085.1	YbfB/YjiJ family MFS transporter	-
Psal135_RS14830 (Psal135_02956)	-	2938550..2939116 (-)	567	WP_017376236.1	hypothetical protein	-
Psal135_RS14840	pilA	2940720..2941673 (+)	954	WP_069971666.1	signal recognition particle-docking protein FtsY	Machinery gene
Psal135_RS14845 (Psal135_02958)	-	2941937..2942632 (-)	696	WP_027243087.1	hypothetical protein	-
Psal135_RS19200	-	2942673..2942807 (-)	135	Protein_2963	IS3 family transposase	-
Psal135_RS19205 (Psal135_02959)	-	2943090..2943917 (-)	828	WP_335645905.1	IS3 family transposase	-
Psal135_RS19210 (Psal135_02960)	-	2943830..2944117 (-)	288	WP_017376231.1	IS3 family transposase	-
Psal135_RS14860 (Psal135_02961)	-	2944183..2944350 (+)	168	WP_017376230.1	hypothetical protein	-
Psal135_RS14865 (Psal135_02962)	-	2944458..2945567 (+)	1110	WP_017376229.1	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 34301.26 Da
• Isoelectric Point: 6.3084

>NTDB_id=357093 Psal135_RS14840 WP_069971666.1 2940720..2941673(+) (pilA) [Piscirickettsia salmonis strain Psal-135]
MEKSNTNSNSEKKQGLFARLKSGLSKTRENLASGITTLLIGEKKIDDELLEDLETQLLMADVGIDATTHIITDLTKRLDR
NELTDTQKAMEALKENLSSMLTPCSVPLEIPKSPDPFVILVVGVNGAGKTTTIGKLAKHYQNQGKSVMLAAGDTFRAAAV
EQLQVWGERNDIPVVAQHTGADSASVIFDAYNSAKAHGCDILIADTAGRLHTQSNLMEELKKVKRVLGKVDNTAPHEVLL
VLDSGTGQNAINQAEQFHHAVNVSGIVMTKLDGTAKGGVIFAIAKKMQLPIRYIGVGEKIDDLRPFKSDEFIEALFG

Nucleotide

• Length: 954 bp

>NTDB_id=357093 Psal135_RS14840 WP_069971666.1 2940720..2941673(+) (pilA) [Piscirickettsia salmonis strain Psal-135]
ATTGAAAAAAGCAACACCAATAGTAATAGCGAGAAAAAGCAAGGCTTATTCGCCCGCTTAAAATCTGGTCTCAGTAAGAC
CCGTGAAAATCTGGCCTCAGGTATTACTACACTTTTAATCGGTGAGAAAAAAATCGATGATGAGCTGCTGGAAGATTTAG
AAACTCAGCTACTCATGGCAGACGTCGGCATTGATGCAACGACCCATATCATTACTGACCTAACCAAGCGTCTTGATCGC
AACGAACTTACAGATACCCAAAAAGCGATGGAAGCGCTCAAAGAAAACCTATCCAGCATGCTTACGCCTTGTAGTGTTCC
TCTAGAGATTCCCAAATCACCAGACCCCTTTGTTATTTTAGTCGTCGGCGTCAATGGTGCAGGTAAAACCACAACCATAG
GCAAACTTGCGAAACACTACCAGAACCAAGGCAAAAGCGTCATGCTCGCTGCAGGTGATACCTTCCGCGCTGCCGCGGTT
GAACAATTGCAAGTCTGGGGAGAGCGTAACGATATTCCGGTAGTTGCCCAGCATACCGGTGCTGATAGCGCATCAGTCAT
TTTCGATGCGTATAACTCAGCCAAAGCACATGGTTGTGATATTTTAATTGCCGATACCGCAGGCCGACTGCATACACAAA
GCAACTTAATGGAAGAGCTTAAAAAAGTAAAACGCGTGCTTGGCAAAGTCGACAATACAGCACCGCATGAAGTTTTATTA
GTTCTAGACTCAGGCACCGGGCAAAACGCTATTAACCAAGCTGAGCAGTTTCATCACGCTGTCAATGTATCAGGCATTGT
CATGACTAAACTCGATGGTACTGCTAAAGGTGGGGTCATTTTTGCCATTGCTAAAAAAATGCAACTACCGATCCGTTATA
TCGGTGTCGGTGAAAAAATCGATGATCTACGCCCTTTTAAATCAGATGAATTTATTGAGGCTTTGTTTGGCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (33-97)

• SRP54-type protein, GTPase domain (SRP54) (116-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.074	97.476	0.517