Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   Psal117_RS14840 Genome accession   NZ_CP039097
Coordinates   2940610..2941461 (+) Length   283 a.a.
NCBI ID   WP_036817216.1    Uniprot ID   -
Organism   Piscirickettsia salmonis strain Psal-117     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2935610..2946461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Psal117_RS14815 (Psal117_02948) - 2935684..2936040 (+) 357 WP_048875886.1 class I SAM-dependent methyltransferase -
  Psal117_RS14820 (Psal117_02949) - 2936037..2937440 (-) 1404 WP_053856766.1 IS4 family transposase -
  Psal117_RS14825 (Psal117_02950) - 2937560..2938120 (-) 561 WP_027243085.1 YbfB/YjiJ family MFS transporter -
  Psal117_RS14830 (Psal117_02951) - 2938278..2938844 (-) 567 WP_017376236.1 hypothetical protein -
  Psal117_RS18555 (Psal117_02952) - 2939047..2939559 (+) 513 WP_196214340.1 hypothetical protein -
  Psal117_RS14840 (Psal117_02953) pilA 2940610..2941461 (+) 852 WP_036817216.1 signal recognition particle-docking protein FtsY Machinery gene
  Psal117_RS14845 (Psal117_02954) - 2941725..2942420 (-) 696 WP_027243087.1 hypothetical protein -
  Psal117_RS19120 - 2942461..2942595 (-) 135 Protein_2960 IS3 family transposase -
  Psal117_RS19125 (Psal117_02955) - 2942878..2943705 (-) 828 WP_335645905.1 IS3 family transposase -
  Psal117_RS19130 (Psal117_02956) - 2943618..2943905 (-) 288 WP_017376231.1 IS3 family transposase -
  Psal117_RS14860 (Psal117_02957) - 2943971..2944138 (+) 168 WP_017376230.1 hypothetical protein -
  Psal117_RS14865 (Psal117_02958) - 2944246..2945355 (+) 1110 WP_017376229.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 30625.16 Da        Isoelectric Point: 5.3721

>NTDB_id=357051 Psal117_RS14840 WP_036817216.1 2940610..2941461(+) (pilA) [Piscirickettsia salmonis strain Psal-117]
MTTLLIGEKKIDDELLEDLETQLLMADVGIDATTHIITDLTKRLDRNELTDTQKAMEALKENLSSMLTPCSVPLEIPKSP
DPFVILVVGVNGAGKTTTIGKLAKHYQNQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVVAQHTGADSASVIFDAYNSA
KAHGCDILIADTAGRLHTQSNLMEELKKVKRVLGKVDNTAPHEVLLVLDSGTGQNAINQAEQFHHAVNVSGIVMTKLDGT
AKGGVIFAIAKKMQLPIRYIGVGEKIDDLRPFKSDEFIEALFG

Nucleotide


Download         Length: 852 bp        

>NTDB_id=357051 Psal117_RS14840 WP_036817216.1 2940610..2941461(+) (pilA) [Piscirickettsia salmonis strain Psal-117]
ATTACTACACTTTTAATCGGTGAGAAAAAAATCGATGATGAGCTGCTGGAAGATTTAGAAACTCAGCTACTCATGGCAGA
CGTCGGCATTGATGCAACGACCCATATCATTACTGACCTAACCAAGCGTCTTGATCGCAACGAACTTACAGATACCCAAA
AAGCGATGGAAGCGCTCAAAGAAAACCTATCCAGCATGCTTACGCCTTGTAGTGTTCCTCTAGAGATTCCCAAATCACCA
GACCCCTTTGTTATTTTAGTCGTCGGCGTCAATGGTGCAGGTAAAACCACAACCATAGGCAAACTTGCGAAACACTACCA
GAACCAAGGCAAAAGCGTCATGCTCGCTGCAGGTGATACCTTCCGCGCTGCCGCGGTTGAACAATTGCAAGTCTGGGGAG
AGCGTAACGATATTCCGGTAGTTGCCCAGCATACCGGTGCTGATAGCGCATCAGTCATTTTCGATGCGTATAACTCAGCC
AAAGCACATGGTTGTGATATTTTAATTGCCGATACCGCAGGCCGACTGCATACACAAAGCAACTTAATGGAAGAGCTTAA
AAAAGTAAAACGCGTGCTTGGCAAAGTCGACAATACAGCACCGCATGAAGTTTTATTAGTTCTAGACTCAGGCACCGGGC
AAAACGCTATTAACCAAGCTGAGCAGTTTCATCACGCTGTCAATGTATCAGGCATTGTCATGACTAAACTCGATGGTACT
GCTAAAGGTGGGGTCATTTTTGCCATTGCTAAAAAAATGCAACTACCGATCCGTTATATCGGTGTCGGTGAAAAAATCGA
TGATCTACGCCCTTTTAAATCAGATGAATTTATTGAGGCTTTGTTTGGCTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(82-282)

SRP54-type protein, helical bundle domain (SRP54_N)

(6-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

54.676

98.233

0.537

Multiple sequence alignment