Detailed information NTG0356995

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: Psal109_RS14850
• Genome accession: NZ_CP039076
• Coordinates: 2940415..2941368 (+)
• Length: 317 a.a.
• NCBI ID: WP_069971666.1
• Uniprot ID: -
• Organism: Piscirickettsia salmonis strain Psal-109
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2935415..2946368

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Psal109_RS14825 (Psal109_02947)	-	2935651..2936007 (+)	357	WP_048875886.1	class I SAM-dependent methyltransferase	-
Psal109_RS14830 (Psal109_02948)	-	2936004..2937407 (-)	1404	WP_053856766.1	IS4 family transposase	-
Psal109_RS14835 (Psal109_02949)	-	2937527..2938087 (-)	561	WP_027243085.1	YbfB/YjiJ family MFS transporter	-
Psal109_RS14840 (Psal109_02950)	-	2938245..2938811 (-)	567	WP_017376236.1	hypothetical protein	-
Psal109_RS14850	pilA	2940415..2941368 (+)	954	WP_069971666.1	signal recognition particle-docking protein FtsY	Machinery gene
Psal109_RS14855 (Psal109_02952)	-	2941632..2942327 (-)	696	WP_027243087.1	hypothetical protein	-
Psal109_RS19220	-	2942368..2942502 (-)	135	Protein_2959	IS3 family transposase	-
Psal109_RS19225 (Psal109_02953)	-	2942785..2943612 (-)	828	WP_335645905.1	IS3 family transposase	-
Psal109_RS19230 (Psal109_02954)	-	2943525..2943812 (-)	288	WP_017376231.1	IS3 family transposase	-
Psal109_RS14870 (Psal109_02955)	-	2943878..2944045 (+)	168	WP_017376230.1	hypothetical protein	-
Psal109_RS14875 (Psal109_02956)	-	2944153..2945262 (+)	1110	WP_017376229.1	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 34301.26 Da
• Isoelectric Point: 6.3084

>NTDB_id=356995 Psal109_RS14850 WP_069971666.1 2940415..2941368(+) (pilA) [Piscirickettsia salmonis strain Psal-109]
MEKSNTNSNSEKKQGLFARLKSGLSKTRENLASGITTLLIGEKKIDDELLEDLETQLLMADVGIDATTHIITDLTKRLDR
NELTDTQKAMEALKENLSSMLTPCSVPLEIPKSPDPFVILVVGVNGAGKTTTIGKLAKHYQNQGKSVMLAAGDTFRAAAV
EQLQVWGERNDIPVVAQHTGADSASVIFDAYNSAKAHGCDILIADTAGRLHTQSNLMEELKKVKRVLGKVDNTAPHEVLL
VLDSGTGQNAINQAEQFHHAVNVSGIVMTKLDGTAKGGVIFAIAKKMQLPIRYIGVGEKIDDLRPFKSDEFIEALFG

Nucleotide

• Length: 954 bp

>NTDB_id=356995 Psal109_RS14850 WP_069971666.1 2940415..2941368(+) (pilA) [Piscirickettsia salmonis strain Psal-109]
ATTGAAAAAAGCAACACCAATAGTAATAGCGAGAAAAAGCAAGGCTTATTCGCCCGCTTAAAATCTGGTCTCAGTAAGAC
CCGTGAAAATCTGGCCTCAGGTATTACTACACTTTTAATCGGTGAGAAAAAAATCGATGATGAGCTGCTGGAAGATTTAG
AAACTCAGCTACTCATGGCAGACGTCGGCATTGATGCAACGACCCATATCATTACTGACCTAACCAAGCGTCTTGATCGC
AACGAACTTACAGATACCCAAAAAGCGATGGAAGCGCTCAAAGAAAACCTATCCAGCATGCTTACGCCTTGTAGTGTTCC
TCTAGAGATTCCCAAATCACCAGACCCCTTTGTTATTTTAGTCGTCGGCGTCAATGGTGCAGGTAAAACCACAACCATAG
GCAAACTTGCGAAACACTACCAGAACCAAGGCAAAAGCGTCATGCTCGCTGCAGGTGATACCTTCCGCGCTGCCGCGGTT
GAACAATTGCAAGTCTGGGGAGAGCGTAACGATATTCCGGTAGTTGCCCAGCATACCGGTGCTGATAGCGCATCAGTCAT
TTTCGATGCGTATAACTCAGCCAAAGCACATGGTTGTGATATTTTAATTGCCGATACCGCAGGCCGACTGCATACACAAA
GCAACTTAATGGAAGAGCTTAAAAAAGTAAAACGCGTGCTTGGCAAAGTCGACAATACAGCACCGCATGAAGTTTTATTA
GTTCTAGACTCAGGCACCGGGCAAAACGCTATTAACCAAGCTGAGCAGTTTCATCACGCTGTCAATGTATCAGGCATTGT
CATGACTAAACTCGATGGTACTGCTAAAGGTGGGGTCATTTTTGCCATTGCTAAAAAAATGCAACTACCGATCCGTTATA
TCGGTGTCGGTGAAAAAATCGATGATCTACGCCCTTTTAAATCAGATGAATTTATTGAGGCTTTGTTTGGCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (33-97)

• SRP54-type protein, GTPase domain (SRP54) (116-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.074	97.476	0.517