Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   A7X85_RS26890 Genome accession   NZ_CP047019
Coordinates   5986089..5987498 (-) Length   469 a.a.
NCBI ID   WP_055724269.1    Uniprot ID   A0ABW9I158
Organism   Streptomyces sp. ST1015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5981089..5992498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7X85_RS26865 (A7X85_27005) - 5981194..5981844 (-) 651 WP_112475046.1 hypothetical protein -
  A7X85_RS26870 (A7X85_27010) - 5981829..5982371 (-) 543 WP_055724273.1 SigE family RNA polymerase sigma factor -
  A7X85_RS26875 (A7X85_27015) - 5982685..5983671 (-) 987 WP_223009145.1 A/G-specific adenine glycosylase -
  A7X85_RS26880 (A7X85_27020) - 5983920..5984747 (+) 828 WP_112476950.1 hypothetical protein -
  A7X85_RS26885 (A7X85_27025) disA 5984884..5986008 (-) 1125 WP_055724270.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  A7X85_RS26890 (A7X85_27030) radA/sms 5986089..5987498 (-) 1410 WP_055724269.1 DNA repair protein RadA Machinery gene
  A7X85_RS26895 (A7X85_27035) - 5987699..5989356 (+) 1658 Protein_5369 BACON domain-containing protein -
  A7X85_RS26900 (A7X85_27040) - 5989788..5990666 (-) 879 WP_193555470.1 hypothetical protein -
  A7X85_RS26905 (A7X85_27045) - 5990750..5991682 (+) 933 WP_109364986.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49641.81 Da        Isoelectric Point: 8.0030

>NTDB_id=356957 A7X85_RS26890 WP_055724269.1 5986089..5987498(-) (radA/sms) [Streptomyces sp. ST1015]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTSSALPIGQVDGRQATARTTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIGALADDLYLAAETDLSMVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDTQI
PTPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVRLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKVPAGMKVLEVADIGDALRVLPRSRRRQAPQSEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=356957 A7X85_RS26890 WP_055724269.1 5986089..5987498(-) (radA/sms) [Streptomyces sp. ST1015]
ATGGCTGCCCGTACGAAGACCACCAAGGACCGTCCCTCCTACCGCTGCACGGAGTGCGGCTGGCAGACGGCCAAGTGGCT
GGGCCGGTGCCCGGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGCGCCGGCGGTGCGTACGACGGCGCCGGGCC
GGGTGACGTCCTCCGCGCTGCCGATCGGCCAGGTGGACGGCAGGCAGGCGACGGCGCGCACGACGGGCGTGCCGGAGCTG
GACCGCGTGCTGGGCGGCGGTCTGGTCCCCGGCGCGGTGGTGCTCCTGGCGGGCGAGCCGGGCGTGGGCAAGTCGACGCT
GCTGCTGGACGTGGCGGCGAAGTCGGCGAGCGACGAGCACCGCACGCTGTACGTGACGGGCGAGGAGTCGGCGAGCCAGG
TGCGCCTGCGCGCGGACCGCATCGGCGCGCTGGCCGACGACCTGTACCTCGCGGCGGAGACGGACCTGTCGATGGTCCTG
GGCCACCTGGACGCGGTGAAGCCGTCGCTGCTGATCCTGGACTCGGTGCAGACGGTCGCCTCCCCGGAGATCGACGGCGC
CCCGGGCGGCATGGCGCAGGTGCGCGAGGTGGCGGGCGCCCTGATCCGCGCCTCGAAGGAGCGCGGCATGTCGACGCTCC
TGGTGGGCCATGTCACGAAGGACGGCGCGATCGCGGGCCCGCGCCTGCTGGAGCACCTGGTGGACGTGGTCCTGCACTTC
GAGGGCGACCGGCACGCGCGCCTGCGCCTGGTGCGGGGCGTCAAGAACCGCTACGGCGCGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGGATCACGGGCCTCGCGGACCCGAGCGGCCTGTTCTTGACCCGCCGCGCCGAGCCGGTGCCGG
GCACGTGCCTGACGGTCACGCTGGAGGGCCGCCGCCCGCTGGTCGCGGAGGTGCAGGCGCTGACCGTGGACACGCAGATC
CCCACCCCGCGCCGGACGACGTCGGGCCTGGAGACGTCGCGGGTGTCGATGATGCTGGCCGTCCTGGAGCAGCGCGGCCG
GATCAGCGCGCTGGGCAAGCGGGACATCTACTCGGCGACGGTGGGCGGCGTACGCCTGTCGGAGCCGGCGGCGGATCTGG
CGATCGCCCTCGCGCTGGCGTCGGCGGCGAGCGACACCCCGCTGCCGAAGAACCTGGTGGCGATCGGCGAGGTGGGCCTG
GCGGGCGAGGTGCGGCGGGTGACCGGCGTGCAGCGCAGGCTCGCGGAGGCGCACCGCCTGGGCTTCACGCACGCGCTGGT
GCCGGGCGACCCGGGGAAGGTCCCGGCCGGGATGAAGGTCCTGGAAGTCGCCGACATAGGGGACGCCCTGCGCGTGCTCC
CGCGCTCGCGTCGCCGACAGGCCCCCCAGAGCGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-428)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.375

0.42
  radA Streptococcus pneumoniae Rx1

42.539

95.736

0.407
  radA Streptococcus pneumoniae D39

42.539

95.736

0.407
  radA Streptococcus pneumoniae R6

42.539

95.736

0.407
  radA Streptococcus pneumoniae TIGR4

42.539

95.736

0.407
  radA Streptococcus mitis SK321

42.539

95.736

0.407
  radA Streptococcus mitis NCTC 12261

42.539

95.736

0.407