Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   A7X85_RS23940 Genome accession   NZ_CP047019
Coordinates   5331421..5332542 (+) Length   373 a.a.
NCBI ID   WP_112474778.1    Uniprot ID   -
Organism   Streptomyces sp. ST1015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5326421..5337542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7X85_RS23930 (A7X85_24045) dnaN 5329233..5330363 (+) 1131 WP_109361975.1 DNA polymerase III subunit beta -
  A7X85_RS23935 (A7X85_24050) gnd 5330511..5331386 (+) 876 WP_112474777.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  A7X85_RS23940 (A7X85_24055) recF 5331421..5332542 (+) 1122 WP_112474778.1 DNA replication/repair protein RecF Machinery gene
  A7X85_RS23945 (A7X85_24060) - 5332539..5333132 (+) 594 WP_079056961.1 DUF721 domain-containing protein -
  A7X85_RS23950 (A7X85_24065) gyrB 5333572..5335635 (+) 2064 WP_055722103.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 40849.50 Da        Isoelectric Point: 6.9326

>NTDB_id=356944 A7X85_RS23940 WP_112474778.1 5331421..5332542(+) (recF) [Streptomyces sp. ST1015]
MHVTHLSLADFRSYARAEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPLVRMGAERAIIRAQVRQGERQ
QLVELELNPGRSNRARVNRSSQVRPRDVLGILRTVLFAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQ
RNTLLKSAALARRHGGRTMDLSTLDVWDQHLARAGAELLAQRLDLVATLQPLADKAYEQLAPGGGPIALEYKPSAPGEAH
TREELYEQLMAALAEARKQEIERGVTLVGPHRDDLLLKLGQLPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLVLD
DVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPGVLVGTRFSVSDGQVERV

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=356944 A7X85_RS23940 WP_112474778.1 5331421..5332542(+) (recF) [Streptomyces sp. ST1015]
ATGCACGTCACGCATCTGTCGCTGGCCGACTTCCGTTCGTACGCCCGGGCCGAGGTCCCGCTCGACCCGGGCGTCACCGC
GTTCGTGGGCCCCAACGGGCAGGGCAAGACGAACCTCGTCGAGGCGGTCGGCTATCTCGCGACCCTCGGCAGCCACCGCG
TCGCCTCGGACGCGCCCCTGGTCCGGATGGGCGCCGAGCGGGCGATCATCCGCGCGCAGGTCAGGCAGGGCGAGCGGCAG
CAGCTGGTCGAGCTGGAGCTGAACCCCGGCAGGTCGAACCGCGCGCGCGTCAACCGGTCGAGCCAGGTCCGCCCCCGGGA
CGTCCTCGGCATCCTGCGCACGGTGCTGTTCGCGCCGGAGGACCTCGCGCTCGTCAAGGGCGACCCCGGCGAGCGCCGCC
GCTTCCTGGACGAGCTGGTCACGGCCCGCTCCCCGCGCATGGCCGGCGTCCGCTCCGACTACGAGCGCGTCCTGAAGCAG
CGCAACACGCTCCTCAAGTCGGCCGCCCTGGCGCGCCGGCACGGCGGCCGGACCATGGACCTCTCCACCCTGGACGTCTG
GGACCAGCACCTGGCCCGCGCGGGCGCCGAACTCCTCGCGCAGCGCCTCGACCTGGTCGCGACCCTCCAGCCGCTCGCGG
ACAAGGCGTACGAGCAGCTCGCCCCCGGCGGCGGCCCCATCGCCCTGGAGTACAAGCCGTCCGCGCCCGGCGAGGCGCAC
ACCCGCGAGGAACTGTACGAGCAGCTGATGGCCGCCCTCGCGGAGGCCCGCAAGCAGGAGATCGAACGGGGTGTCACCCT
CGTCGGCCCCCACCGCGACGACCTCCTTCTCAAGCTCGGCCAGCTCCCCGCGAAGGGGTACGCCTCGCACGGCGAGTCCT
GGTCGTACGCCCTCGCCCTGCGCCTGGCCTCCTACGACCTGCTGCGCGCCGAGGGCAACGAGCCGGTGCTCGTCCTGGAC
GACGTCTTCGCCGAACTGGACGCCCGGCGCCGCGAACGCCTGGCCGAGCTGGTGGCCCCCGGCGAGCAGGTGCTGGTGAC
GGCCGCGGTGGACGACGATGTGCCGGGCGTGCTCGTCGGGACGCGGTTCTCGGTGTCGGACGGTCAGGTGGAGCGGGTAT
GA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.202

95.442

0.365