Detailed information NTG0356941

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: Psal098_RS19200
• Genome accession: NZ_CP039055
• Coordinates: 2940762..2941715 (+)
• Length: 317 a.a.
• NCBI ID: WP_069971666.1
• Uniprot ID: -
• Organism: Piscirickettsia salmonis strain Psal-098
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2935762..2946715

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Psal098_RS14835 (Psal098_02950)	-	2936115..2936471 (+)	357	WP_048875886.1	class I SAM-dependent methyltransferase	-
Psal098_RS14840 (Psal098_02951)	-	2936468..2937871 (-)	1404	WP_053856766.1	IS4 family transposase	-
Psal098_RS14845 (Psal098_02952)	-	2937991..2938551 (-)	561	WP_027243085.1	YbfB/YjiJ family MFS transporter	-
Psal098_RS14850 (Psal098_02953)	-	2938709..2939275 (-)	567	WP_017376236.1	hypothetical protein	-
Psal098_RS19200	pilA	2940762..2941715 (+)	954	WP_069971666.1	signal recognition particle-docking protein FtsY	Machinery gene
Psal098_RS14860 (Psal098_02955)	-	2941979..2942674 (-)	696	WP_027243087.1	hypothetical protein	-
Psal098_RS19205	-	2942715..2942849 (-)	135	Protein_2961	IS3 family transposase	-
Psal098_RS19210 (Psal098_02956)	-	2943132..2943959 (-)	828	WP_335645905.1	IS3 family transposase	-
Psal098_RS19215 (Psal098_02957)	-	2943872..2944159 (-)	288	WP_017376231.1	IS3 family transposase	-
Psal098_RS14875 (Psal098_02958)	-	2944225..2944392 (+)	168	WP_017376230.1	hypothetical protein	-
Psal098_RS14880 (Psal098_02959)	-	2944500..2945609 (+)	1110	WP_017376229.1	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 34301.26 Da
• Isoelectric Point: 6.3084

>NTDB_id=356941 Psal098_RS19200 WP_069971666.1 2940762..2941715(+) (pilA) [Piscirickettsia salmonis strain Psal-098]
MEKSNTNSNSEKKQGLFARLKSGLSKTRENLASGITTLLIGEKKIDDELLEDLETQLLMADVGIDATTHIITDLTKRLDR
NELTDTQKAMEALKENLSSMLTPCSVPLEIPKSPDPFVILVVGVNGAGKTTTIGKLAKHYQNQGKSVMLAAGDTFRAAAV
EQLQVWGERNDIPVVAQHTGADSASVIFDAYNSAKAHGCDILIADTAGRLHTQSNLMEELKKVKRVLGKVDNTAPHEVLL
VLDSGTGQNAINQAEQFHHAVNVSGIVMTKLDGTAKGGVIFAIAKKMQLPIRYIGVGEKIDDLRPFKSDEFIEALFG

Nucleotide

• Length: 954 bp

>NTDB_id=356941 Psal098_RS19200 WP_069971666.1 2940762..2941715(+) (pilA) [Piscirickettsia salmonis strain Psal-098]
ATTGAAAAAAGCAACACCAATAGTAATAGCGAGAAAAAGCAAGGCTTATTCGCCCGCTTAAAATCTGGTCTCAGTAAGAC
CCGTGAAAATCTGGCCTCAGGTATTACTACACTTTTAATCGGTGAGAAAAAAATCGATGATGAGCTGCTGGAAGATTTAG
AAACTCAGCTACTCATGGCAGACGTCGGCATTGATGCAACGACCCATATCATTACTGACCTAACCAAGCGTCTTGATCGC
AACGAACTTACAGATACCCAAAAAGCGATGGAAGCGCTCAAAGAAAACCTATCCAGCATGCTTACGCCTTGTAGTGTTCC
TCTAGAGATTCCCAAATCACCAGACCCCTTTGTTATTTTAGTCGTCGGCGTCAATGGTGCAGGTAAAACCACAACCATAG
GCAAACTTGCGAAACACTACCAGAACCAAGGCAAAAGCGTCATGCTCGCTGCAGGTGATACCTTCCGCGCTGCCGCGGTT
GAACAATTGCAAGTCTGGGGAGAGCGTAACGATATTCCGGTAGTTGCCCAGCATACCGGTGCTGATAGCGCATCAGTCAT
TTTCGATGCGTATAACTCAGCCAAAGCACATGGTTGTGATATTTTAATTGCCGATACCGCAGGCCGACTGCATACACAAA
GCAACTTAATGGAAGAGCTTAAAAAAGTAAAACGCGTGCTTGGCAAAGTCGACAATACAGCACCGCATGAAGTTTTATTA
GTTCTAGACTCAGGCACCGGGCAAAACGCTATTAACCAAGCTGAGCAGTTTCATCACGCTGTCAATGTATCAGGCATTGT
CATGACTAAACTCGATGGTACTGCTAAAGGTGGGGTCATTTTTGCCATTGCTAAAAAAATGCAACTACCGATCCGTTATA
TCGGTGTCGGTGAAAAAATCGATGATCTACGCCCTTTTAAATCAGATGAATTTATTGAGGCTTTGTTTGGCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (33-97)

• SRP54-type protein, GTPase domain (SRP54) (116-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.074	97.476	0.517