Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A7X85_RS16505 Genome accession   NZ_CP047019
Coordinates   3725155..3727083 (+) Length   642 a.a.
NCBI ID   WP_112475998.1    Uniprot ID   -
Organism   Streptomyces sp. ST1015     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3720155..3732083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7X85_RS16470 (A7X85_16540) - 3720421..3720750 (+) 330 WP_109364409.1 hypothetical protein -
  A7X85_RS16490 (A7X85_16560) - 3721320..3721610 (+) 291 WP_112473926.1 YtxH domain-containing protein -
  A7X85_RS16495 (A7X85_16565) - 3721738..3723189 (+) 1452 WP_055719202.1 FGGY family carbohydrate kinase -
  A7X85_RS16500 (A7X85_16570) rcrP 3723422..3725155 (+) 1734 WP_055719201.1 ABC transporter ATP-binding protein Regulator
  A7X85_RS16505 (A7X85_16575) rcrQ 3725155..3727083 (+) 1929 WP_112475998.1 ABC transporter ATP-binding protein Regulator
  A7X85_RS16510 (A7X85_16580) - 3727134..3728382 (-) 1249 Protein_3325 RNA polymerase sigma factor -
  A7X85_RS16515 (A7X85_16585) - 3728498..3729070 (+) 573 WP_162650416.1 hypothetical protein -
  A7X85_RS16520 (A7X85_16590) - 3729067..3730008 (+) 942 WP_112475997.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  A7X85_RS16525 (A7X85_16595) dnaG 3729979..3731877 (-) 1899 WP_112483623.1 DNA primase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69321.39 Da        Isoelectric Point: 5.2045

>NTDB_id=356933 A7X85_RS16505 WP_112475998.1 3725155..3727083(+) (rcrQ) [Streptomyces sp. ST1015]
MAGPAGRMLAGAGPDSRSLDFKVSGKRLVGYFKPERLTVYALLVCVVISVGLNVVGPKILGKATDLVFAGIVGRQLPAGE
SKEQVLQGMRDDGQSSVADMLRSTDFTPGKGIDFGAVGEVLGIAVGVFVIAGLLMAVATRLVNRAVNRTVFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLAMMFWVSWLLALVALVTVPLSALVATRIGK
RSQPHFVQQWRTTGQLNAHIEEMYTGHTLVKVFGRQRESAQQFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEADAKDSERPAESLGRVALE
GVSFRYDPDKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIARMSRDDLRADIGMVLQDT
WLFGGTIAENIAYGAARDVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGSHSELLESGGAYARLYKAQFAEAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=356933 A7X85_RS16505 WP_112475998.1 3725155..3727083(+) (rcrQ) [Streptomyces sp. ST1015]
ATGGCCGGGCCTGCGGGACGCATGTTGGCCGGTGCGGGACCCGACAGCCGGTCGCTGGACTTCAAGGTGTCCGGGAAGCG
GCTGGTCGGGTACTTCAAGCCGGAGCGCCTCACGGTGTACGCGCTGCTGGTGTGCGTCGTGATCAGCGTGGGGCTGAACG
TCGTCGGTCCGAAGATCCTCGGGAAGGCGACCGACCTGGTGTTCGCGGGGATCGTCGGGCGGCAGCTGCCGGCCGGCGAG
TCGAAGGAACAGGTCCTCCAGGGGATGCGGGACGACGGGCAGTCGTCCGTCGCGGACATGCTCCGGTCGACGGACTTCAC
GCCCGGCAAGGGCATCGACTTCGGGGCCGTGGGGGAGGTCCTCGGGATCGCCGTCGGCGTGTTCGTGATCGCCGGTCTGC
TGATGGCCGTCGCGACGCGGCTCGTCAACCGGGCCGTCAACCGGACGGTGTTCCGGATGCGGGAGGACGTGCAGACGAAA
CTGTCGCGCCTTCCCCTGTCGTACTTCGACAAACGGCAGCGCGGGGAGGTGCTGTCGCGGGCGACGAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCCATGGGGCAGCTGATCAACTCCGTGCTGACGATCATCGGCGTGCTCGCGATGATGT
TCTGGGTGTCGTGGCTGCTCGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGCGCTCGTCGCGACGCGCATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGGACCACGGGGCAGCTCAACGCGCACATCGAGGAGATGTACACCGGGCA
CACGCTGGTCAAGGTCTTCGGGCGGCAGCGGGAGTCCGCACAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCGG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCCAACCTCAACTATGTGCTGGTGGCG
GTCGTCGGCGGGCTGCGGGTGGCGTCCGGGTCGCTGTCCATCGGGGACGTGCAGGCGTTCATCCAGTACTCGCGCCAGTT
CTCGATGCCGCTCACGCAGGTCGCGTCGATGGCCAACCTGGTGCAGTCCGGGGTCGCGTCGGCCGAGCGGATCTTCGAGC
TCCTCGACGCGGACGAGCAGGAGGCGGACGCGAAGGACTCCGAGCGCCCGGCCGAGTCGCTCGGGCGGGTCGCGCTGGAG
GGCGTGTCCTTCCGGTACGACCCCGACAAGCCGCTCATCGAGGACCTGTCGCTGACCGTCGAACCCGGCCACACGGTCGC
CATCGTCGGCCCCACGGGCGCGGGCAAGACGACCCTCGTCAACCTCCTCATGCGGTTCTACGACGTCTCCGGCGGGCGCA
TCACCCTCGACGGCGTCGACATCGCCCGCATGTCCCGCGACGACCTGCGCGCGGACATCGGCATGGTCCTCCAGGACACG
TGGCTGTTCGGCGGGACGATCGCCGAGAACATCGCGTACGGCGCCGCGCGCGACGTCACGCGCGGGGAGATCGAGGAGGC
GGCGCGGGCGGCGCACGCGGACCGGTTCGTCCGTACGCTGCCGGACGGGTACGACACCGTCATCGACGACGAGGGCAGCG
GGGTCAGCGCGGGTGAGAAGCAGCTCATCACCATCGCGCGCGCGTTCCTGTCCGACCCGGTGATCCTCGTCCTCGACGAG
GCGACGTCCTCCGTCGACACCCGTACGGAGGTGCTGATCCAGAAGGCGATGGCCAAACTGGCGCACGGGCGCACGTCGTT
CGTCATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGCTCGATCGTCGAACAGG
GCTCGCACAGCGAGCTGCTGGAGTCGGGCGGCGCCTACGCGCGGCTGTACAAGGCGCAGTTCGCGGAGGCGGTGGCCGAA
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(42-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.739

95.639

0.38