Detailed information NTG0356913

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: Psal073_RS19065
• Genome accession: NZ_CP039046
• Coordinates: 2936006..2936959 (+)
• Length: 317 a.a.
• NCBI ID: WP_069971666.1
• Uniprot ID: -
• Organism: Piscirickettsia salmonis strain Psal-073
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2931006..2941959

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Psal073_RS14765 (Psal073_02926)	-	2931770..2932078 (+)	309	WP_017376837.1	class I SAM-dependent methyltransferase	-
Psal073_RS14770 (Psal073_02927)	-	2932075..2933478 (-)	1404	WP_048876031.1	IS4 family transposase	-
Psal073_RS14775 (Psal073_02928)	-	2933598..2934158 (-)	561	WP_027243085.1	YbfB/YjiJ family MFS transporter	-
Psal073_RS14780 (Psal073_02929)	-	2934316..2934882 (-)	567	WP_017376236.1	hypothetical protein	-
Psal073_RS19065	pilA	2936006..2936959 (+)	954	WP_069971666.1	signal recognition particle-docking protein FtsY	Machinery gene
Psal073_RS14790 (Psal073_02931)	-	2937223..2937918 (-)	696	WP_027243087.1	hypothetical protein	-
Psal073_RS19070	-	2937959..2938093 (-)	135	Protein_2936	IS3 family transposase	-
Psal073_RS19075 (Psal073_02932)	-	2938376..2939203 (-)	828	WP_335645905.1	IS3 family transposase	-
Psal073_RS19080 (Psal073_02933)	-	2939116..2939403 (-)	288	WP_017376231.1	IS3 family transposase	-
Psal073_RS14805 (Psal073_02934)	-	2939469..2939636 (+)	168	WP_017376230.1	hypothetical protein	-
Psal073_RS14810 (Psal073_02935)	-	2939744..2940853 (+)	1110	WP_017376229.1	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 34301.26 Da
• Isoelectric Point: 6.3084

>NTDB_id=356913 Psal073_RS19065 WP_069971666.1 2936006..2936959(+) (pilA) [Piscirickettsia salmonis strain Psal-073]
MEKSNTNSNSEKKQGLFARLKSGLSKTRENLASGITTLLIGEKKIDDELLEDLETQLLMADVGIDATTHIITDLTKRLDR
NELTDTQKAMEALKENLSSMLTPCSVPLEIPKSPDPFVILVVGVNGAGKTTTIGKLAKHYQNQGKSVMLAAGDTFRAAAV
EQLQVWGERNDIPVVAQHTGADSASVIFDAYNSAKAHGCDILIADTAGRLHTQSNLMEELKKVKRVLGKVDNTAPHEVLL
VLDSGTGQNAINQAEQFHHAVNVSGIVMTKLDGTAKGGVIFAIAKKMQLPIRYIGVGEKIDDLRPFKSDEFIEALFG

Nucleotide

• Length: 954 bp

>NTDB_id=356913 Psal073_RS19065 WP_069971666.1 2936006..2936959(+) (pilA) [Piscirickettsia salmonis strain Psal-073]
ATTGAAAAAAGCAACACCAATAGTAATAGCGAGAAAAAGCAAGGCTTATTCGCCCGCTTAAAATCTGGTCTCAGTAAGAC
CCGTGAAAATCTGGCCTCAGGTATTACTACACTTTTAATCGGTGAGAAAAAAATCGATGATGAGCTGCTGGAAGATTTAG
AAACTCAGCTACTCATGGCAGACGTCGGCATTGATGCAACGACCCATATCATTACTGACCTAACCAAGCGTCTTGATCGC
AACGAACTTACAGATACCCAAAAAGCGATGGAAGCGCTCAAAGAAAACCTATCCAGCATGCTTACGCCTTGTAGTGTTCC
TCTAGAGATTCCCAAATCACCAGACCCCTTTGTTATTTTAGTCGTCGGCGTCAATGGTGCAGGTAAAACCACAACCATAG
GCAAACTTGCGAAACACTACCAGAACCAAGGCAAAAGCGTCATGCTCGCTGCAGGTGATACCTTCCGCGCTGCCGCGGTT
GAACAATTGCAAGTCTGGGGAGAGCGTAACGATATTCCGGTAGTTGCCCAGCATACCGGTGCTGATAGCGCATCAGTCAT
TTTCGATGCGTATAACTCAGCCAAAGCACATGGTTGTGATATTTTAATTGCCGATACCGCAGGCCGACTGCATACACAAA
GCAACTTAATGGAAGAGCTTAAAAAAGTAAAACGCGTGCTTGGCAAAGTCGACAATACAGCACCGCATGAAGTTTTATTA
GTTCTAGACTCAGGCACCGGGCAAAACGCTATTAACCAAGCTGAGCAGTTTCATCACGCTGTCAATGTATCAGGCATTGT
CATGACTAAACTCGATGGTACTGCTAAAGGTGGGGTCATTTTTGCCATTGCTAAAAAAATGCAACTACCGATCCGTTATA
TCGGTGTCGGTGAAAAAATCGATGATCTACGCCCTTTTAAATCAGATGAATTTATTGAGGCTTTGTTTGGCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (33-97)

• SRP54-type protein, GTPase domain (SRP54) (116-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.074	97.476	0.517