Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FI9785_RS07735 Genome accession   NC_013504
Coordinates   1579467..1581275 (+) Length   602 a.a.
NCBI ID   WP_012846688.1    Uniprot ID   -
Organism   Lactobacillus johnsonii FI9785     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1574467..1586275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FI9785_RS07710 (FI9785_1639) - 1574848..1575630 (-) 783 WP_012846683.1 threonine/serine exporter family protein -
  FI9785_RS07715 (FI9785_1640) - 1575647..1577194 (-) 1548 WP_012846684.1 ABC-F family ATP-binding cassette domain-containing protein -
  FI9785_RS07720 (FI9785_1641) - 1577194..1577577 (-) 384 WP_012846685.1 hypothetical protein -
  FI9785_RS07725 (FI9785_1642) - 1577802..1578074 (+) 273 WP_012846686.1 hypothetical protein -
  FI9785_RS07730 (FI9785_1643) - 1578179..1579303 (-) 1125 WP_012846687.1 LCP family protein -
  FI9785_RS07735 (FI9785_1644) pepF 1579467..1581275 (+) 1809 WP_012846688.1 oligoendopeptidase F Regulator
  FI9785_RS07740 (FI9785_1645) - 1581344..1582855 (-) 1512 WP_012846689.1 lactate permease LctP family transporter -
  FI9785_RS07745 (FI9785_1646) - 1582977..1583768 (-) 792 WP_012846690.1 metal ABC transporter permease -
  FI9785_RS07750 (FI9785_1647) - 1583768..1584427 (-) 660 WP_012846691.1 ATP-binding cassette domain-containing protein -
  FI9785_RS07755 (FI9785_1648) - 1584464..1585363 (-) 900 WP_012846692.1 zinc ABC transporter substrate-binding protein -
  FI9785_RS07760 (FI9785_1649) - 1585665..1585943 (-) 279 WP_011162513.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68508.27 Da        Isoelectric Point: 4.6627

>NTDB_id=35688 FI9785_RS07735 WP_012846688.1 1579467..1581275(+) (pepF) [Lactobacillus johnsonii FI9785]
MALPTRNEVSDDLKWDLSRVFKDDQEWEQEYNQVATEIKNLDRFKGNLAKSGQDLYGGITEILSVNRRLEKVYVYATMSS
DVDTSNTHYLGLVAKAQSLANQMSAAISFVDPEILSIPGETLAKFMQDEPRLKEYQHRLEQITKKRPHTLPASEEKIIAA
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNAQVHKYNSAREAALSENGVPTAVYDTLVKEVNSHLNLLHRYVGLRKKILGLSDLQMYDMYVPLTGEPSLSYNFEEA
KNEARRALAPLGKDYLEHVDYIFNNRVIDVVESQNKVTGAYSGGSYDTDPYELLNWEDNLDSLYTLIHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHEADANGQPLTA
DVLDEFYGNLNQRYYGDSVEPGGEIAKEWARIPHFYYNFYVYQYATGFAAATALANNVVHGTDKERTAYINFLKAGSSDY
PTEIMKRAGIDMTKADYLKDAFNTFEKRLNEFEKIVNELKTI

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=35688 FI9785_RS07735 WP_012846688.1 1579467..1581275(+) (pepF) [Lactobacillus johnsonii FI9785]
ATGGCTCTTCCAACAAGAAATGAAGTATCTGATGATCTCAAATGGGATCTTAGTCGTGTTTTTAAAGACGATCAGGAATG
GGAACAAGAATATAATCAGGTCGCAACCGAAATTAAAAATTTAGATAGATTTAAGGGAAATCTTGCTAAATCTGGTCAAG
ATTTATATGGAGGAATTACAGAAATTTTATCTGTAAATCGTCGTTTAGAAAAAGTGTACGTTTATGCTACTATGTCAAGC
GACGTTGATACTAGTAATACTCATTATCTAGGCCTTGTTGCTAAAGCTCAAAGCTTAGCTAACCAAATGAGCGCCGCTAT
CTCCTTTGTCGATCCTGAAATTTTATCTATCCCAGGAGAGACACTTGCTAAATTTATGCAAGATGAACCTCGTTTAAAAG
AGTATCAACATCGACTTGAACAAATTACTAAGAAACGTCCTCATACTTTACCAGCAAGCGAAGAAAAAATTATTGCCGCT
GCTGGAGATGCAATGGGAACTTCCGCTAATACTTTCAATGTTTTAACTAATTCTGATATGGAATACGGGTATGTTCAAGA
TGAAGACGGAGAGATGGTCCAATTATCTGATGGCTTATATTCACTTCTAATTCAGTCACAAGATAGAAACGTTCGCAAAA
ATGCATTTGATGTTATGTATGCAAGCTATGGCCAGTTTGAAAATAGTCTCGCTTCAACTTTATCAGGTGAAGTAAAAGCC
CACAATTTTAATGCTCAAGTACATAAATACAATTCAGCTCGAGAGGCTGCTTTAAGTGAAAATGGCGTACCAACAGCTGT
TTACGATACATTGGTTAAAGAGGTAAATAGTCACCTCAACTTACTTCATCGCTACGTTGGTTTAAGAAAAAAGATTTTAG
GTCTTTCTGATCTACAAATGTATGATATGTATGTTCCATTAACCGGTGAGCCTAGTCTTTCTTATAACTTTGAAGAAGCA
AAAAATGAGGCTAGACGAGCCTTAGCGCCATTAGGAAAAGATTACCTCGAACATGTTGATTACATCTTTAATAATCGTGT
AATTGATGTGGTTGAAAGCCAAAATAAGGTAACAGGCGCTTATTCCGGTGGTTCCTATGATACTGATCCATATGAATTAT
TAAATTGGGAGGATAATCTTGATTCTCTCTATACTCTAATTCATGAAACTGGACACTCAGTGCATTCCTGGTATACAAGA
AATACTCAACCATATGTATATGGAGACTACCCAATTTTTGTTGCTGAAATTGCATCAACAACTAATGAAAATATTTTAAC
TGAATACTTCTTAGATAAAATTACCGATCCTAAAACACGCGCATTTGTTTTGAATCACTATCTTGATTCATTTAAGGGTA
CACTCTTCCGTCAAACACAATTTGCAGAATTTGAGCAGTTTATTCATGAAGCCGACGCAAATGGTCAACCATTAACTGCC
GATGTTCTTGATGAATTTTACGGCAATTTAAACCAAAGATATTACGGTGATAGTGTAGAACCGGGCGGAGAGATTGCTAA
AGAATGGGCCCGTATTCCTCATTTTTATTACAACTTTTATGTTTACCAATATGCAACAGGCTTTGCTGCTGCTACAGCTC
TCGCAAATAATGTTGTTCATGGTACTGACAAAGAACGTACAGCTTATATTAATTTCTTAAAGGCTGGCTCTTCAGATTAT
CCAACAGAGATAATGAAACGTGCCGGTATCGATATGACAAAGGCCGATTACTTAAAAGATGCATTTAATACTTTTGAAAA
ACGACTTAATGAGTTTGAAAAAATCGTTAATGAATTGAAAACAATCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.931

98.173

0.5

Multiple sequence alignment