Detailed information NTG0356874

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GQF95_RS16885
• Genome accession: NZ_CP047010
• Coordinates: 3465011..3466003 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 19-5
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3460011..3471003

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GQF95_RS16865 (GQF95_16850)	otnK	3460786..3462048 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
GQF95_RS16870 (GQF95_16855)	ygbL	3462045..3462683 (+)	639	WP_001278994.1	aldolase	-
GQF95_RS16875 (GQF95_16860)	ygbM	3462688..3463464 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
GQF95_RS16880 (GQF95_16865)	ygbN	3463553..3464917 (+)	1365	WP_000104441.1	GntP family transporter	-
GQF95_RS16885 (GQF95_16870)	rpoS	3465011..3466003 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GQF95_RS16890 (GQF95_16875)	nlpD	3466066..3467160 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
GQF95_RS16895 (GQF95_16880)	pcm	3467345..3467971 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GQF95_RS16900 (GQF95_16885)	surE	3467965..3468726 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GQF95_RS16905 (GQF95_16890)	truD	3468707..3469756 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
GQF95_RS16910 (GQF95_16895)	ispF	3469753..3470232 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GQF95_RS16915 (GQF95_16900)	ispD	3470232..3470942 (-)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=356874 GQF95_RS16885 WP_000081550.1 3465011..3466003(-) (rpoS) [Escherichia coli strain 19-5]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=356874 GQF95_RS16885 WP_000081550.1 3465011..3466003(-) (rpoS) [Escherichia coli strain 19-5]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715