Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GQF95_RS13470 Genome accession   NZ_CP047010
Coordinates   2726638..2728062 (+) Length   474 a.a.
NCBI ID   WP_000132545.1    Uniprot ID   -
Organism   Escherichia coli strain 19-5     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2721638..2733062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQF95_RS13430 (GQF95_13400) - 2721957..2722394 (-) 438 WP_053908467.1 lysis protein -
  GQF95_RS13435 (GQF95_13405) - 2722391..2722867 (-) 477 WP_000229392.1 glycoside hydrolase family protein -
  GQF95_RS13440 (GQF95_13410) - 2722851..2723174 (-) 324 WP_000783734.1 phage holin, lambda family -
  GQF95_RS13445 (GQF95_13415) - 2723608..2724231 (-) 624 WP_053908465.1 antitermination protein -
  GQF95_RS13450 (GQF95_13420) - 2724228..2724818 (-) 591 Protein_2657 metallophosphoesterase -
  GQF95_RS13455 (GQF95_13425) - 2724822..2725001 (+) 180 WP_053908461.1 Eag protein -
  GQF95_RS13460 (GQF95_13430) - 2725106..2725297 (+) 192 WP_000132739.1 AlpA family phage regulatory protein -
  GQF95_RS13465 (GQF95_13435) - 2725278..2726456 (-) 1179 WP_088539999.1 site-specific integrase -
  GQF95_RS13470 (GQF95_13440) sbcB 2726638..2728062 (+) 1425 WP_000132545.1 exodeoxyribonuclease I Machinery gene
  GQF95_RS13475 (GQF95_13445) tsuB 2728105..2728332 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GQF95_RS13480 (GQF95_13450) tsuA 2728346..2729404 (-) 1059 WP_053908457.1 thiosulfate utilization transporter TsuA/YeeE -
  GQF95_RS13485 (GQF95_13455) plaP 2729583..2730941 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GQF95_RS13490 (GQF95_13460) yoeI 2730931..2730993 (-) 63 WP_010723108.1 membrane protein YoeI -
  GQF95_RS13495 (GQF95_13465) yeeY 2731208..2732136 (-) 929 Protein_2666 LysR substrate-binding domain-containing protein -
  GQF95_RS13500 (GQF95_13470) yeeZ 2732182..2733006 (-) 825 WP_000754752.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54395.66 Da        Isoelectric Point: 5.2440

>NTDB_id=356861 GQF95_RS13470 WP_000132545.1 2726638..2728062(+) (sbcB) [Escherichia coli strain 19-5]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=356861 GQF95_RS13470 WP_000132545.1 2726638..2728062(+) (sbcB) [Escherichia coli strain 19-5]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
AGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584