Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | E5093_RS06485 | Genome accession | NZ_CP039031 |
| Coordinates | 1372455..1372826 (+) | Length | 123 a.a. |
| NCBI ID | WP_225876427.1 | Uniprot ID | - |
| Organism | Acinetobacter indicus strain yy_1 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1367455..1377826
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5093_RS06455 (E5093_06505) | kdsB | 1368175..1368939 (+) | 765 | WP_104488987.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| E5093_RS06460 (E5093_06510) | - | 1368948..1369931 (+) | 984 | WP_177155569.1 | DNA polymerase III subunit delta' | - |
| E5093_RS06465 (E5093_06515) | - | 1369943..1370284 (+) | 342 | WP_177155570.1 | PilZ domain-containing protein | - |
| E5093_RS06470 (E5093_06520) | - | 1370314..1371087 (+) | 774 | WP_005177502.1 | TatD family hydrolase | - |
| E5093_RS06475 (E5093_06525) | - | 1371147..1371761 (+) | 615 | WP_016658223.1 | TetR/AcrR family transcriptional regulator | - |
| E5093_RS06480 (E5093_06530) | - | 1371767..1372339 (+) | 573 | WP_160241360.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| E5093_RS06485 (E5093_06535) | xcpV | 1372455..1372826 (+) | 372 | WP_225876427.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| E5093_RS06490 (E5093_06540) | xcpW | 1372823..1373458 (+) | 636 | WP_177155571.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| E5093_RS06495 (E5093_06545) | gspK | 1373504..1374451 (+) | 948 | WP_075174516.1 | type II secretion system minor pseudopilin GspK | - |
| E5093_RS06500 (E5093_06550) | - | 1374599..1375195 (+) | 597 | WP_005177512.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| E5093_RS06505 (E5093_06555) | ung | 1375237..1375950 (+) | 714 | WP_177155572.1 | uracil-DNA glycosylase | - |
| E5093_RS06510 (E5093_06560) | - | 1375947..1377071 (+) | 1125 | WP_005177517.1 | enoyl-CoA hydratase/isomerase family protein | - |
| E5093_RS06515 (E5093_06565) | tadA | 1377075..1377596 (+) | 522 | WP_075166790.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 123 a.a. Molecular weight: 13550.50 Da Isoelectric Point: 5.5255
>NTDB_id=356834 E5093_RS06485 WP_225876427.1 1372455..1372826(+) (xcpV) [Acinetobacter indicus strain yy_1]
MAGFTLLEVMVALAIFATAAMALTQVAMQYTQSTSHAILRTKAQFVALNEQALMEIQQDWLTGTQSKQVTLQGESWQIDK
SAQPTISPNVQRVEVQVSLFNLDTGQVEAGITHLVFFNHRAAQ
MAGFTLLEVMVALAIFATAAMALTQVAMQYTQSTSHAILRTKAQFVALNEQALMEIQQDWLTGTQSKQVTLQGESWQIDK
SAQPTISPNVQRVEVQVSLFNLDTGQVEAGITHLVFFNHRAAQ
Nucleotide
Download Length: 372 bp
>NTDB_id=356834 E5093_RS06485 WP_225876427.1 1372455..1372826(+) (xcpV) [Acinetobacter indicus strain yy_1]
ATTGCCGGTTTTACCTTATTAGAAGTGATGGTGGCACTGGCGATTTTCGCTACAGCTGCCATGGCGCTGACTCAAGTGGC
CATGCAATATACCCAGTCGACCTCTCATGCCATTTTAAGAACCAAAGCGCAGTTTGTGGCCTTAAACGAACAGGCATTAA
TGGAAATCCAGCAGGACTGGCTCACGGGTACGCAATCAAAACAGGTCACCCTGCAAGGTGAAAGCTGGCAAATTGATAAA
AGCGCACAGCCCACCATTAGCCCGAATGTGCAGCGGGTAGAAGTGCAGGTCAGCTTATTTAACCTCGATACCGGTCAGGT
TGAAGCCGGCATCACCCATTTGGTGTTTTTTAATCATCGGGCGGCGCAATGA
ATTGCCGGTTTTACCTTATTAGAAGTGATGGTGGCACTGGCGATTTTCGCTACAGCTGCCATGGCGCTGACTCAAGTGGC
CATGCAATATACCCAGTCGACCTCTCATGCCATTTTAAGAACCAAAGCGCAGTTTGTGGCCTTAAACGAACAGGCATTAA
TGGAAATCCAGCAGGACTGGCTCACGGGTACGCAATCAAAACAGGTCACCCTGCAAGGTGAAAGCTGGCAAATTGATAAA
AGCGCACAGCCCACCATTAGCCCGAATGTGCAGCGGGTAGAAGTGCAGGTCAGCTTATTTAACCTCGATACCGGTCAGGT
TGAAGCCGGCATCACCCATTTGGTGTTTTTTAATCATCGGGCGGCGCAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
77.778 |
95.122 |
0.74 |