Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   E5093_RS01785 Genome accession   NZ_CP039031
Coordinates   386674..388896 (-) Length   740 a.a.
NCBI ID   WP_177155284.1    Uniprot ID   -
Organism   Acinetobacter indicus strain yy_1     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 381674..393896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5093_RS01760 (E5093_01760) - 381895..382164 (-) 270 WP_034598128.1 YdcH family protein -
  E5093_RS01765 (E5093_01765) - 382241..382579 (-) 339 WP_005181858.1 chaperone modulator CbpM -
  E5093_RS01770 (E5093_01770) - 382983..383444 (-) 462 WP_177155283.1 DUF2147 domain-containing protein -
  E5093_RS01775 (E5093_01775) - 383856..384731 (-) 876 WP_005181862.1 Hsp33 family molecular chaperone HslO -
  E5093_RS01780 (E5093_01780) - 384782..386623 (-) 1842 WP_163143006.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  E5093_RS01785 (E5093_01785) priA 386674..388896 (-) 2223 WP_177155284.1 primosomal protein N' Machinery gene
  E5093_RS01790 (E5093_01790) gspF 389048..390253 (+) 1206 WP_005181870.1 type II secretion system inner membrane protein GspF -
  E5093_RS01795 (E5093_01795) gspG 390305..390742 (+) 438 WP_005181871.1 type II secretion system major pseudopilin GspG -
  E5093_RS01800 (E5093_01800) - 391022..391357 (+) 336 WP_045795389.1 hypothetical protein -
  E5093_RS01805 (E5093_01805) lnt 391508..393067 (-) 1560 WP_177155285.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84247.37 Da        Isoelectric Point: 8.8759

>NTDB_id=356826 E5093_RS01785 WP_177155284.1 386674..388896(-) (priA) [Acinetobacter indicus strain yy_1]
MPNSPVHPAPIYRVRVAVPVYLYDGFDYMLSAAEYQQAAVGARVLVSFGRQNLVGIIIEKLPPDHPLDPKIKLKAISELL
DQQPILDQKVLTLLTWSAQYYQFPIGEVMHSALPSLLRQGRPYNLLARMWKLLDDQAEAKLKRSEKQQEAYKVLKLHPSG
TSENILNLAGIETATLKALEKKQICYCDLEQQDFSPVPMTLAQMPLTPNSDQKRAIETVLKAQHRYQAFLLDGLTGSGKT
EVYLQIMQEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAQTGKASIILGTRSAIYTPL
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLEHCPVILGSATPSIDSYALTEQGKMIRLELNQRAGPALMPKIHI
IDLKVAQKQQGLSLLLIQEIKKRLQKKEQVLIFLNRRGYAPVLVCDSCGWQAQCPHCDANFTLHHSPYTHLHCHHCGTIQ
RKPEQCPQCQHNELKTLGMGTAKVEENLQQLFPDYDVVRVDRDSTSRVGSWQKIYDRIQTSQPLILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHPLLSTLVEQDYRAFARQTLKERQAALL
PPFRYTALIRCESKSQEQNQQFLQQHAQWLRENSEQLIDIWGPIPAPMERKAGRYQAHLVLLSQDRARLHFYLRAWWQNM
LYHKPSNMKLSLDIDPQEFS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=356826 E5093_RS01785 WP_177155284.1 386674..388896(-) (priA) [Acinetobacter indicus strain yy_1]
ATGCCAAATTCGCCCGTTCATCCCGCCCCCATCTACCGTGTTCGTGTAGCTGTTCCGGTCTATCTGTATGACGGGTTTGA
CTATATGCTCAGTGCGGCTGAATATCAGCAGGCTGCCGTTGGCGCGCGGGTGCTGGTGTCCTTTGGCCGGCAGAATCTGG
TAGGCATCATTATTGAAAAACTCCCGCCCGATCATCCGCTTGACCCCAAGATTAAACTGAAAGCCATTAGCGAGCTGCTC
GACCAGCAGCCGATTCTAGATCAGAAAGTTTTAACTTTGTTGACATGGTCGGCGCAGTATTATCAGTTTCCGATTGGCGA
AGTGATGCATAGCGCCCTGCCCAGCCTGTTACGTCAGGGACGCCCGTATAATTTACTGGCACGAATGTGGAAACTACTGG
ATGATCAGGCCGAAGCCAAACTGAAGCGCTCCGAGAAGCAGCAGGAGGCCTATAAAGTCCTGAAGCTGCATCCGAGCGGG
ACTTCAGAAAATATCCTGAATCTGGCCGGTATTGAAACTGCAACCTTAAAAGCGCTGGAAAAAAAGCAGATTTGCTATTG
CGATCTGGAGCAGCAGGATTTTAGCCCGGTGCCAATGACGCTGGCGCAAATGCCGTTAACCCCGAACAGTGACCAGAAAC
GGGCCATTGAAACCGTACTGAAAGCGCAGCATCGTTATCAGGCCTTTTTACTCGATGGTCTGACCGGTAGTGGTAAAACC
GAAGTCTATCTGCAGATCATGCAGGAAGTGCTAAAACAGGGTAAACAGGTATTGGTGCTGGTGCCGGAAATTGGCCTGAC
TCCTCAAACCATTAGCCGCTTCCAGTCACGTTTTCACTGTCATATTGCGCTGCTGCATTCCGGTTTAAATGACAGCAAAC
GTCTGCAGGCCTGGCAGGCCGCCCAGACTGGCAAGGCTTCGATTATTCTTGGTACACGCTCGGCAATTTATACCCCGCTG
CCCAATCTGGGGCTGATTATTCTGGATGAAGAACACGACCTGTCATTTAAACAGCAGGAAGGCTTTCGTTACCATGCCCG
CGATGTGGCCTTATACCGTGCTCATTTAGAACACTGCCCGGTGATTCTCGGTTCGGCCACGCCCAGCATTGACAGCTATG
CCTTAACGGAACAGGGTAAAATGATCCGTCTGGAACTGAACCAGCGTGCCGGCCCGGCACTGATGCCGAAAATTCACATC
ATTGATTTAAAAGTTGCGCAAAAGCAGCAAGGTCTAAGCCTGCTGCTGATTCAGGAAATCAAAAAACGCCTGCAGAAAAA
AGAACAGGTGCTGATTTTCTTAAACCGCCGTGGTTATGCACCGGTGCTGGTCTGTGACAGCTGCGGCTGGCAGGCACAAT
GCCCACACTGTGATGCCAACTTTACCCTGCATCATAGTCCATATACCCATCTGCATTGTCATCATTGTGGCACCATTCAA
CGCAAGCCGGAGCAATGCCCGCAGTGCCAGCATAATGAACTGAAAACCCTGGGCATGGGCACAGCCAAGGTTGAAGAAAA
CCTGCAACAGCTGTTCCCGGATTACGATGTGGTGCGGGTGGACCGCGATTCCACCAGCCGCGTCGGCAGCTGGCAAAAAA
TTTATGACCGCATTCAAACCAGCCAGCCGCTGATTCTGCTTGGCACTCAAATGCTGGCCAAAGGCCATCATTTTCCTTAT
GTGACTCTAGTGGCGATTTTAGACATTGATGCCGGCCTGTTAAGTGTTGATATTCGGGCGCCAGAGCGGACTGCGCAGCT
GATTGTGCAGGTGGCCGGTCGTGCTGGTCGCGGTGAGCATAAAGGCGATGTCTATTTACAGACCTTGCGTCCTGATCATC
CGCTGCTGAGTACCCTGGTCGAGCAGGATTATCGTGCCTTTGCCCGGCAAACCTTAAAAGAACGTCAGGCCGCCCTACTG
CCCCCGTTTCGCTATACTGCGCTGATTCGCTGCGAATCGAAAAGTCAGGAGCAGAATCAGCAGTTTTTACAGCAACATGC
CCAGTGGCTGCGAGAAAATTCTGAACAGTTAATTGATATCTGGGGACCGATTCCGGCGCCAATGGAACGCAAGGCCGGCC
GCTATCAGGCGCATCTGGTGCTGTTGTCGCAAGATCGCGCCCGTTTACATTTTTATCTACGTGCATGGTGGCAAAATATG
TTGTATCACAAGCCATCAAATATGAAACTTAGCTTAGATATAGACCCTCAGGAATTCAGTTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(207-369)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

73.486

100

0.738

Multiple sequence alignment