Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   E5093_RS00915 Genome accession   NZ_CP039031
Coordinates   193523..194680 (-) Length   385 a.a.
NCBI ID   WP_016658990.1    Uniprot ID   V2UEN4
Organism   Acinetobacter indicus strain yy_1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 188523..199680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5093_RS00890 (E5093_00885) - 188799..189407 (-) 609 WP_177155237.1 hypothetical protein -
  E5093_RS00895 (E5093_00890) - 189590..190132 (-) 543 WP_005181445.1 glutathione peroxidase -
  E5093_RS00900 (E5093_00895) - 190461..191372 (+) 912 WP_005181447.1 DMT family transporter -
  E5093_RS00905 (E5093_00905) - 191753..192319 (-) 567 WP_005181449.1 L-threonylcarbamoyladenylate synthase -
  E5093_RS00910 (E5093_00910) dprA 192364..193506 (-) 1143 WP_075168149.1 DNA-processing protein DprA Machinery gene
  E5093_RS00915 (E5093_00915) tsaP 193523..194680 (-) 1158 WP_016658990.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  E5093_RS00920 (E5093_00920) def 194800..195324 (+) 525 WP_177155238.1 peptide deformylase -
  E5093_RS00925 (E5093_00925) - 195415..195837 (+) 423 WP_104472874.1 DUF2946 family protein -
  E5093_RS00930 (E5093_00930) - 195911..197944 (+) 2034 WP_177155239.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42521.54 Da        Isoelectric Point: 8.8330

>NTDB_id=356817 E5093_RS00915 WP_016658990.1 193523..194680(-) (tsaP) [Acinetobacter indicus strain yy_1]
MKKVLKGTSSFRALGLKQQALALAVCFSFGVGAVSTVQAAPARNINPPTLQANAPNVYVVKKGDTLWDISKKFLQNPLRW
REIWASNKHVKNPHWIFPGDRLLMCTYDGRPIIGKDEGDGCEGIIRRYTGNTTSLQPQIRVESLNNTIPVIPLEYIQHWL
ERTSIIAPESLQQTPYILGTADQRVLAAKGQNVYARGQGLQVGQRYAVYREGEPYIFTDANGKKYNAGLELTQVASGIAV
RGENDITTLELTDTYNAEVRRGDRVLPEYDPMLPTLFYPTNAEHIAADGQVVRVMGSIGTAAKHSVVTIDRGQAHGVQSG
HVFAVTQKGEVVTDPKTRERVQLPGERIGYAMVFKTFDQLSYAYILDSELPIKVGAGIQPPIMED

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=356817 E5093_RS00915 WP_016658990.1 193523..194680(-) (tsaP) [Acinetobacter indicus strain yy_1]
ATGAAAAAGGTTTTGAAGGGCACATCTTCTTTTCGTGCCTTGGGGTTAAAACAGCAGGCGCTGGCACTTGCTGTCTGTTT
CAGTTTTGGGGTGGGCGCAGTCAGTACCGTACAGGCCGCACCGGCACGCAATATCAACCCACCGACCTTACAGGCCAATG
CACCAAATGTGTATGTGGTGAAAAAAGGCGATACGCTGTGGGATATTTCCAAGAAGTTTCTGCAAAACCCGCTGCGCTGG
CGTGAAATCTGGGCCAGCAACAAGCACGTGAAAAATCCGCACTGGATTTTCCCGGGAGATCGCCTGCTGATGTGTACCTA
TGATGGCCGCCCGATCATTGGTAAAGATGAAGGTGATGGCTGTGAAGGTATTATCCGTCGTTATACCGGCAACACCACCA
GCCTGCAGCCGCAAATCCGGGTCGAGTCACTCAACAATACCATTCCGGTGATTCCACTGGAGTACATCCAGCACTGGTTG
GAACGTACCAGCATTATTGCCCCTGAGTCTTTGCAACAGACGCCTTATATTTTAGGCACGGCGGATCAGCGTGTCCTGGC
GGCCAAAGGCCAGAATGTCTATGCCCGCGGTCAGGGTCTGCAAGTTGGCCAGCGTTATGCTGTGTATCGTGAAGGCGAAC
CGTATATCTTCACCGATGCCAACGGTAAAAAATACAATGCCGGTCTGGAGCTGACTCAGGTTGCATCCGGTATTGCAGTA
CGCGGTGAAAATGATATTACCACCCTGGAACTGACCGATACCTACAATGCCGAAGTGCGTCGTGGCGATCGTGTGCTGCC
AGAATATGACCCGATGTTACCAACCCTGTTCTACCCGACCAATGCCGAACACATTGCAGCAGATGGCCAGGTGGTACGTG
TGATGGGTTCAATTGGGACCGCAGCTAAACACAGTGTGGTCACCATTGACCGTGGTCAGGCGCACGGCGTGCAATCCGGT
CATGTATTTGCTGTAACTCAAAAAGGCGAAGTGGTCACCGATCCGAAAACCCGTGAACGGGTGCAGCTGCCAGGCGAGCG
GATTGGCTATGCCATGGTCTTTAAAACCTTTGACCAGCTCAGCTATGCCTATATTCTGGACAGCGAACTACCAATTAAAG
TCGGGGCCGGTATTCAGCCACCGATTATGGAAGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V2UEN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

66.234

100

0.662

Multiple sequence alignment